Package | Description |
---|---|
eu.etaxonomy.cdm.api.service.molecular | |
eu.etaxonomy.cdm.model.molecular |
Provides classes for DNA samples and related sequences.
|
eu.etaxonomy.cdm.persistence.dao.hibernate.molecular | |
eu.etaxonomy.cdm.persistence.dao.molecular |
Modifier and Type | Method and Description |
---|---|
Pager<Primer> |
PrimerServiceImpl.findByLabel(java.lang.String queryString,
MatchMode matchmode,
java.util.List<org.hibernate.criterion.Criterion> criteria,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<Primer> |
IPrimerService.findByLabel(java.lang.String queryString,
MatchMode matchmode,
java.util.List<org.hibernate.criterion.Criterion> criteria,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Return a List of
Primer s matching the given query string, optionally with a particular MatchMode |
java.util.List<UuidAndTitleCache<Primer>> |
PrimerServiceImpl.getPrimerUuidAndTitleCache() |
java.util.List<UuidAndTitleCache<Primer>> |
IPrimerService.getPrimerUuidAndTitleCache()
Retrieves the
UUID and the string representation (title cache) of all
Primer s found in the data base. |
java.util.List<UuidAndTitleCache<Primer>> |
PrimerServiceImpl.getPrimerUuidAndTitleCache(java.lang.Integer limitOfInitialElements,
java.lang.String pattern) |
java.util.List<UuidAndTitleCache<Primer>> |
IPrimerService.getPrimerUuidAndTitleCache(java.lang.Integer limitOfInitialElements,
java.lang.String pattern) |
Modifier and Type | Method and Description |
---|---|
Primer |
Cloning.getForwardPrimer()
The primer used for forward cloning.
|
Primer |
Amplification.getForwardPrimer()
The primer used for forward amplification.
|
Primer |
SingleRead.getPrimer()
The
primer used for processing this single sequence. |
Primer |
Cloning.getReversePrimer()
The primer used for reverse cloning.
|
Primer |
Amplification.getReversePrimer()
The primer used for reverse amplification.
|
static Primer |
Primer.NewInstance(java.lang.String label) |
Modifier and Type | Method and Description |
---|---|
static Cloning |
Cloning.NewInstance(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText,
java.lang.String strain,
Primer forwardPrimer,
Primer reversePrimer) |
void |
Cloning.setForwardPrimer(Primer forwardPrimer) |
void |
Amplification.setForwardPrimer(Primer forwardPrimer) |
void |
SingleRead.setPrimer(Primer primer) |
void |
Cloning.setReversePrimer(Primer reversePrimer) |
void |
Amplification.setReversePrimer(Primer reversePrimer) |
Constructor and Description |
---|
Cloning(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText,
java.lang.String strain,
Primer forwardPrimer,
Primer reversePrimer) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Primer> |
PrimerDaoHibernateImpl.findByTitle(java.lang.String queryString,
MatchMode matchmode,
java.util.List<org.hibernate.criterion.Criterion> criteria,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<UuidAndTitleCache<Primer>> |
PrimerDaoHibernateImpl.getPrimerUuidAndTitleCache() |
java.util.List<UuidAndTitleCache<Primer>> |
PrimerDaoHibernateImpl.getPrimerUuidAndTitleCache(java.lang.Integer limitOfInitialElements,
java.lang.String pattern) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Primer> |
IPrimerDao.findByTitle(java.lang.String queryString,
MatchMode matchmode,
java.util.List<org.hibernate.criterion.Criterion> criteria,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Return a List of
Primer s matching the given query string, optionally with a particular MatchMode |
java.util.List<UuidAndTitleCache<Primer>> |
IPrimerDao.getPrimerUuidAndTitleCache()
Retrieves the
UUID and the string representation (title cache) of all
Primer s found in the data base. |
java.util.List<UuidAndTitleCache<Primer>> |
IPrimerDao.getPrimerUuidAndTitleCache(java.lang.Integer limitOfInitialElements,
java.lang.String pattern) |
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