Skip navigation links
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 

A

ABBREV_AUTHOR - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
ABBREV_REF_AUTHOR - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
ABBREV_REF_TITLE - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
ABBREV_TITLE - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
abbrevHybridGenus - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
abbrevHybridSecondPart - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
abbrevHybridSecondPartOnlyInfraSpecies - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
abbrevHybridSecondPartWithSpecies - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
ABBREVIATION - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
abbreviation - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
ABBREVIATION() - Static method in class eu.etaxonomy.cdm.model.common.ExtensionType
 
Abcd206DataHolder - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206DataHolder() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
Abcd206Import - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206Import() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206Import
 
Abcd206ImportConfigurator - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206ImportParser - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206ImportParser() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportParser
 
Abcd206ImportState - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206ImportState(Abcd206ImportConfigurator) - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportState
 
Abcd206WrapperInstance() - Static method in class eu.etaxonomy.cdm.io.common.ImportWrapper
 
Abcd206XMLFieldGetter - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
Abcd206XMLFieldGetter(Abcd206DataHolder, String) - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206XMLFieldGetter
 
AbcdDnaParser - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in.molecular
 
AbcdDnaParser(String, SpecimenImportReport, ICdmRepository) - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.molecular.AbcdDnaParser
 
AbcdGgbnParser - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in.molecular
 
AbcdGgbnParser(SpecimenImportReport, ICdmRepository) - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.molecular.AbcdGgbnParser
 
AbcdImportUtility - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
AbcdImportUtility() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.AbcdImportUtility
 
AbcdParseUtility - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
AbcdParseUtility() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.AbcdParseUtility
 
AbcdPersonParser - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
AbcdPersonParser(String, SpecimenImportReport, ICdmRepository) - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.AbcdPersonParser
 
AbcdTransformer - Class in eu.etaxonomy.cdm.io.specimen.abcd206.in
 
AbcdTransformer() - Constructor for class eu.etaxonomy.cdm.io.specimen.abcd206.in.AbcdTransformer
 
ABKHAZIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
About - Class in eu.etaxonomy.cdm.remote.dto.oaipmh
Data "about" the record must be expressed in XML that is compliant with an XML Schema defined by a community.
About() - Constructor for class eu.etaxonomy.cdm.remote.dto.oaipmh.About
 
about - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Record
 
AboutTaxon() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.voc.SpeciesProfileModel.AboutTaxon
 
AboutTaxon(TaxonConcept, boolean) - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.voc.SpeciesProfileModel.AboutTaxon
 
ABSENT() - Static method in class eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm
 
absolute(int) - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
absoluteElevationToString() - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
Returns the correctly formatted absolute elevation information.
AbstractBeanInitializer - Class in eu.etaxonomy.cdm.persistence.dao.initializer
 
AbstractBeanInitializer() - Constructor for class eu.etaxonomy.cdm.persistence.dao.initializer.AbstractBeanInitializer
 
AbstractBeanProcessor<T> - Class in eu.etaxonomy.cdm.remote.json.processor.bean
 
AbstractBeanProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.bean.AbstractBeanProcessor
 
AbstractCategoricalDescriptionBuilder - Class in eu.etaxonomy.cdm.api.service
 
AbstractCategoricalDescriptionBuilder() - Constructor for class eu.etaxonomy.cdm.api.service.AbstractCategoricalDescriptionBuilder
 
AbstractCdmBeanProcessor<T extends CdmBase> - Class in eu.etaxonomy.cdm.remote.json.processor.bean
 
AbstractCdmBeanProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.bean.AbstractCdmBeanProcessor
 
AbstractCdmFormatter - Class in eu.etaxonomy.cdm.format
 
AbstractCdmFormatter(Object, ICdmFormatter.FormatKey[]) - Constructor for class eu.etaxonomy.cdm.format.AbstractCdmFormatter
 
AbstractClassBridge - Class in eu.etaxonomy.cdm.hibernate.search
Base class for class bridges.
AbstractClassBridge() - Constructor for class eu.etaxonomy.cdm.hibernate.search.AbstractClassBridge
 
AbstractController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
Abstract controller class for CDM Rest service controllers which return entities or DTOs from the underlying data base.
AbstractController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AbstractController
 
AbstractDataInserter - Class in eu.etaxonomy.cdm.api.application
 
AbstractDataInserter() - Constructor for class eu.etaxonomy.cdm.api.application.AbstractDataInserter
 
AbstractEllypsisFormatter<T extends CdmBase> - Class in eu.etaxonomy.cdm.format
 
AbstractEllypsisFormatter() - Constructor for class eu.etaxonomy.cdm.format.AbstractEllypsisFormatter
 
AbstractEllypsisFormatter.EllipsisData - Class in eu.etaxonomy.cdm.format
 
AbstractHibernateTaxonGraphProcessor - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.taxonGraph
 
AbstractHibernateTaxonGraphProcessor() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.taxonGraph.AbstractHibernateTaxonGraphProcessor
 
AbstractIdentifiableController<T extends IdentifiableEntity,SERVICE extends IIdentifiableEntityService<T>> - Class in eu.etaxonomy.cdm.remote.controller
 
AbstractIdentifiableController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AbstractIdentifiableController
 
AbstractIdentifiableListController<T extends IdentifiableEntity,SERVICE extends IIdentifiableEntityService<T>> - Class in eu.etaxonomy.cdm.remote.controller
 
AbstractIdentifiableListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AbstractIdentifiableListController
 
AbstractLinkDto - Class in eu.etaxonomy.cdm.remote.dto.polytomouskey
 
AbstractLinkDto() - Constructor for class eu.etaxonomy.cdm.remote.dto.polytomouskey.AbstractLinkDto
 
AbstractListController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
 
AbstractListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AbstractListController
 
AbstractModifiableThingBeanProcessor<T extends CdmBase> - Class in eu.etaxonomy.cdm.remote.json.processor.bean
An abstract bean processor for DescriptionElement classes having modifyingText
AbstractModifiableThingBeanProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.bean.AbstractModifiableThingBeanProcessor
 
AbstractOaiPmhController<T extends IdentifiableEntity,SERVICE extends IIdentifiableEntityService<T>> - Class in eu.etaxonomy.cdm.remote.controller.oaipmh
 
AbstractOaiPmhController() - Constructor for class eu.etaxonomy.cdm.remote.controller.oaipmh.AbstractOaiPmhController
 
AbstractPagerImpl<T> - Class in eu.etaxonomy.cdm.api.service.pager.impl
 
AbstractPagerImpl(Integer, Integer, Integer, List<T>, String) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
Deprecated.
This constructor only supports total result counts to Integer.MAX_VALUE u use AbstractPagerImpl(Integer currentIndex, Long count, Integer pageSize, List records, String suggestion) instead
AbstractPagerImpl(Integer, Long, Integer, List<T>, String) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
Constructor
AbstractPagerImpl(Integer, Integer, Integer, List<T>) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
Deprecated.
This constructor only supports total result counts to Integer.MAX_VALUE u use AbstractPagerImpl(Integer currentIndex, Long count, Integer pageSize, List records, String suggestion) instead
AbstractPagerImpl(Integer, Long, Integer, List<T>) - Constructor for class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
Constructor
AbstractQuantitativeDescriptionBuilder - Class in eu.etaxonomy.cdm.api.service
 
AbstractQuantitativeDescriptionBuilder() - Constructor for class eu.etaxonomy.cdm.api.service.AbstractQuantitativeDescriptionBuilder
 
AbstractRelationshipEdge<T extends RelationshipTermBase> - Class in eu.etaxonomy.cdm.api.service.util
Holds a RelationshipType (RelationshipTermBase) of type <T> and gives it a direction which is one of: direct, everted: Direction.relatedTo inverse: Direction.relatedFrom bidirectional: Direction.relatedTo and Direction.relatedFrom
AbstractRelationshipEdge(T, RelationshipBase.Direction...) - Constructor for class eu.etaxonomy.cdm.api.service.util.AbstractRelationshipEdge
 
AbstractRelationshipEdge(Set<T>, RelationshipBase.Direction...) - Constructor for class eu.etaxonomy.cdm.api.service.util.AbstractRelationshipEdge
 
AbstractRunAs - Class in eu.etaxonomy.cdm.api.application
 
AbstractRunAs() - Constructor for class eu.etaxonomy.cdm.api.application.AbstractRunAs
 
AbstractStringComparator<T> - Class in eu.etaxonomy.cdm.common
Abstract Comparator for Strings which allows define substitution rules which are applied to the String to be compared before the actual comparison takes place.
AbstractStringComparator() - Constructor for class eu.etaxonomy.cdm.common.AbstractStringComparator
 
AbstractTermDto - Class in eu.etaxonomy.cdm.persistence.dto
 
AbstractTermDto(UUID, Set<Representation>) - Constructor for class eu.etaxonomy.cdm.persistence.dto.AbstractTermDto
 
AbstractWebApplicationConfigurer - Class in eu.etaxonomy.cdm.remote.config
 
AbstractWebApplicationConfigurer() - Constructor for class eu.etaxonomy.cdm.remote.config.AbstractWebApplicationConfigurer
 
ACC_TAXON - Static variable in class eu.etaxonomy.cdm.hibernate.search.AcceptedTaxonBridge
 
ACC_TAXON_BRIDGE_PREFIX - Static variable in class eu.etaxonomy.cdm.model.taxon.TaxonBase
 
ACCEPTED - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
ACCEPTED_ID_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
ACCEPTED_NAME - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
ACCEPTED_NAME_STATUS - Static variable in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Taxonomic status 'accepted' string
AcceptedNameSearch - Class in eu.etaxonomy.cdm.remote.dto.namecatalogue
 
AcceptedNameSearch() - Constructor for class eu.etaxonomy.cdm.remote.dto.namecatalogue.AcceptedNameSearch
 
AcceptedNameSearch.Request - Class in eu.etaxonomy.cdm.remote.dto.namecatalogue
 
AcceptedNameSearch.Response - Class in eu.etaxonomy.cdm.remote.dto.namecatalogue
 
acceptedNameUsage - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
acceptedNameUsageID - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
AcceptedTaxonBridge - Class in eu.etaxonomy.cdm.hibernate.search
Lucene index class bridge which sets the uuids of the accepted taxon for the TaxonBase object into the index.
AcceptedTaxonBridge() - Constructor for class eu.etaxonomy.cdm.hibernate.search.AcceptedTaxonBridge
 
acceptedTaxonFor(Synonym, Classification, List<String>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
acceptedTaxonFor(Synonym, Classification, List<String>) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.ITaxonDao
This method was originally required when synonyms still had a synonym relationship to taxa and could belong to multiple taxa.
acceptedTaxonStatusLabel() - Method in enum eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the recommended value for the accepted taxon status according to http://code.google.com/p/darwincore/wiki/Taxon#taxonomicStatus
ACCESS - Static variable in class eu.etaxonomy.cdm.io.common.Source
 
ACCESS_DENIED - Static variable in class eu.etaxonomy.cdm.remote.controller.HttpStatusMessage
 
ACCESS_RIGHTS() - Static method in class eu.etaxonomy.cdm.model.media.RightsType
http://purl.org/dc/terms/accessRights
accessDeniedException - Static variable in class eu.etaxonomy.cdm.test.integration.SecurityExceptionUtils
 
ACCESSION_NUMBER - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
ACCESSIONING() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
The accessioning in a collection which usually results in an accession number.
accessionNumber - Variable in class eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery
 
accessionNumber - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
accessionNumber - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
accessionNumber - Variable in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXDataHolder
 
accessRights - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
AccordingTo() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.voc.TaxonConcept.AccordingTo
 
AccordingTo(Actor, boolean) - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.voc.TaxonConcept.AccordingTo
 
accountNonExpired - Variable in class eu.etaxonomy.cdm.model.permission.User
 
accountNonLocked - Variable in class eu.etaxonomy.cdm.model.permission.User
 
accountsFile - Static variable in class eu.etaxonomy.cdm.config.AccountStore
 
AccountStore - Class in eu.etaxonomy.cdm.config
 
AccountStore() - Constructor for class eu.etaxonomy.cdm.config.AccountStore
 
accumulateSingleTaxon(TaxonNode) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
ACHINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ACOLI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
activateIssueFor(Registration, User, Issue) - Method in class eu.etaxonomy.cdm.ext.registration.messages.redmine.RedmineRegistrationMessageService
 
activateMessagesFor(Registration, User) - Method in interface eu.etaxonomy.cdm.ext.registration.messages.IRegistrationMessageService
 
activateMessagesFor(Registration, User) - Method in class eu.etaxonomy.cdm.ext.registration.messages.redmine.RedmineRegistrationMessageService
 
Actor - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
Actor() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.Actor
 
ADANGME() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
add(Registration) - Method in class eu.etaxonomy.cdm.api.service.dto.RegistrationWorkingSet
 
add(RegistrationDTO) - Method in class eu.etaxonomy.cdm.api.service.dto.RegistrationWorkingSet
 
add(String, Integer) - Method in class eu.etaxonomy.cdm.database.update.v47_50.VocabularyOrderUpdater
 
add(String, String, String) - Method in class eu.etaxonomy.cdm.ext.geo.GeoServiceArea
 
add(IReader<TYPE>) - Method in class eu.etaxonomy.cdm.io.stream.ConcatenatingReader
 
add(NamedArea) - Method in class eu.etaxonomy.cdm.model.location.NamedArea.LevelNode
 
add(NamedAreaLevel) - Method in class eu.etaxonomy.cdm.model.location.NamedArea.NamedAreaNode
 
add(Integer, Rank, Integer) - Method in class eu.etaxonomy.cdm.persistence.dto.ClassificationLookupDTO
 
add(CdmFetch) - Method in class eu.etaxonomy.cdm.persistence.fetch.CdmFetch
 
add(CdmDataChangeEvent.EventType, CdmDataChangeEvent) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
add(Criteria, Map<String, Criteria>) - Method in class eu.etaxonomy.cdm.persistence.query.NativeSqlOrderHint
 
add(AuditQuery) - Method in class eu.etaxonomy.cdm.persistence.query.NativeSqlOrderHint
 
add(Criteria, Map<String, Criteria>) - Method in class eu.etaxonomy.cdm.persistence.query.OrderHint
FIXME document this
add(AuditQuery) - Method in class eu.etaxonomy.cdm.persistence.query.OrderHint
FIXME document this
add(Criteria, Map<String, Criteria>) - Method in class eu.etaxonomy.cdm.persistence.query.RandomOrder
 
add(AuditQuery) - Method in class eu.etaxonomy.cdm.persistence.query.RandomOrder
 
add(TagEnum, String) - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
add(TagEnum, String, TypedEntityReference<?>) - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
add(TagEnum, String, CdmBase) - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
addActualAccesPoint(URI) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenImportStateBase
 
addAddress(String, String, String, Country, String, String, Point) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
Adds a new address to this agent
addAddress(Address) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addAddress(Address) - Method in class eu.etaxonomy.cdm.model.agent.Contact
Adds a new postal address to the set of postal addresses of this contact.
addAddress(String, String, String, Country, String, String, Point) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addAgentRelation(DefinedTerm, TeamOrPersonBase<?>) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
 
addAgentRelation(TaxonNodeAgentRelation) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
 
addAggregatingSourceTypes(OriginalSourceType) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationConfigurationBase
 
addAggregationResultToDescription(TaxonDescription, DescriptionAggregationBase.ResultHolder) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
addAggregationResultToDescription(TaxonDescription, DescriptionAggregationBase.ResultHolder) - Method in class eu.etaxonomy.cdm.api.service.description.DistributionAggregation
 
addAggregationResultToDescription(TaxonDescription, DescriptionAggregationBase.ResultHolder) - Method in class eu.etaxonomy.cdm.api.service.description.StructuredDescriptionAggregation
 
addAggregationSource(ICdmTarget) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addAggregationSource(ICdmTarget) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addAggregationSource(ICdmTarget) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
Adds a source which links to another CDM object as source.
addAll(TaggedTextBuilder) - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
addAll(List<TaggedText>) - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
addAllDerivates(Set<DerivateDTO>) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDTO
 
addAlreadyExistingSpecimen(String, DerivedUnit) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addAmplificationResult(AmplificationResult) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
addAndSaveSource(Reference, TaxonDescription, Reference) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addAndSaveSource(Reference, DerivedUnit) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addAnnotation(Annotation) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addAnnotation(Annotation) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
addAnnotation(Annotation) - Method in interface eu.etaxonomy.cdm.model.common.IAnnotatableEntity
 
addAnnotationFromResultSet(ResultSet, String, AnnotatableEntity, Language) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addAppendedTaggedPhrase(List<TaggedText>, INonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.TaxonNameDefaultCacheStrategy
Adds the tag for the appended phrase if an appended phrase exists
addApplicableState(FeatureState) - Method in class eu.etaxonomy.cdm.model.term.TermNode
Adds an existing applicable state to the set of applicable states described in this feature node.
addApplicableState(Feature, State) - Method in class eu.etaxonomy.cdm.model.term.TermNode
 
addArea(DefinedTermBase) - Method in class eu.etaxonomy.cdm.io.specimen.UnitsGatheringEvent
 
addAssociatedTaxon(Taxon) - Method in class eu.etaxonomy.cdm.api.service.dto.PreservedSpecimenDTO
 
addAssociatedUnitId(String[]) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
addAuthority(AuthorityBase) - Method in class eu.etaxonomy.cdm.model.permission.Group
 
addAuthority(AuthorityBase) - Method in class eu.etaxonomy.cdm.model.permission.User
 
addAuthorToStore(TeamOrPersonBase<?>) - Method in class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportState
 
addBasionym(TaxonName) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Assigns a taxon name as basionym of this taxon name.
addBasionym(TaxonName, Reference, String, String, NomenclaturalCodeEdition) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Assigns a taxon name as basionym of this taxon name and keeps the nomenclatural rule considered for it.
addBasionym(TaxonName) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Assigns a taxon name as basionym of this taxon name.
addBasionym(TaxonName, Reference, String, String, NomenclaturalCodeEdition) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Assigns a taxon name as basionym of this taxon name and keeps the nomenclatural rule considered for it.
addBean(Object) - Method in class eu.etaxonomy.cdm.persistence.dao.initializer.BeanInitNode
Add a bean represented by this node
addBeans(Collection<?>) - Method in class eu.etaxonomy.cdm.persistence.dao.initializer.BeanInitNode
Adds beans represented by this node
addBlockedBy(Registration) - Method in class eu.etaxonomy.cdm.model.name.Registration
 
addBooleanValue(ResultSet, ICdmBase, String, String) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addCacheManager(CacheManager) - Method in class eu.etaxonomy.cdm.api.cache.CdmCacher
Returns the singleton default cache manager.
addCacheMatcher(CacheMatcher) - Method in class eu.etaxonomy.cdm.strategy.match.Matching
 
addCategoricalData(Feature) - Method in class eu.etaxonomy.cdm.api.service.dto.RowWrapperDTO
 
addCharacterData(String, String) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDTO
 
addCheckUsedQuery(String, int) - Method in class eu.etaxonomy.cdm.database.update.SingleTermRemover
 
addChild(EntityDTO<Taxon>) - Method in class eu.etaxonomy.cdm.api.service.dto.TaxonInContextDTO
 
addChild(CdmEntityIdentifier) - Method in interface eu.etaxonomy.cdm.api.service.ITestService
 
addChild(CdmEntityIdentifier) - Method in class eu.etaxonomy.cdm.api.service.TestServiceImpl
 
addChild(EntityCacherDebugResult.CdmEntityInfo) - Method in class eu.etaxonomy.cdm.cache.EntityCacherDebugResult.CdmEntityInfo
 
addChild(TreeNode<T, S>) - Method in class eu.etaxonomy.cdm.common.TreeNode
Adds a child to the list of children for this TreeNode.
addChild(OrderHelper) - Method in class eu.etaxonomy.cdm.io.cdmLight.OrderHelper
 
addChild(PolytomousKeyNode) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Adds the given polytomous key node at the end of the list of children of this polytomous key node.
addChild(PolytomousKeyNode, int) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Inserts the given child node in the list of children of this polytomous key node at the given (index + 1) position.
addChild(TermNode<T>) - Method in class eu.etaxonomy.cdm.model.term.TermNode
Adds the given term node at the end of the list of children of this term node.
addChild() - Method in class eu.etaxonomy.cdm.model.term.TermNode
Creates a new node without a term and adds it to the end of the list of children of this node.
addChild(T) - Method in class eu.etaxonomy.cdm.model.term.TermNode
Creates a new node for the given term and adds it to the end of the list of children of this node.
addChild(T, int) - Method in class eu.etaxonomy.cdm.model.term.TermNode
Creates a new node for the given term and adds it at the given (index + 1) position of the list of children of this node.
addChild(TermNode<T>, int) - Method in class eu.etaxonomy.cdm.model.term.TermNode
Inserts the given feature node in the list of children of this feature node at the given (index + 1) position.
addChildFeatureNode(UUID, UUID) - Method in class eu.etaxonomy.cdm.api.service.FeatureNodeServiceImpl
 
addChildFeatureNode(UUID, UUID, int) - Method in class eu.etaxonomy.cdm.api.service.FeatureNodeServiceImpl
 
addChildFeatureNode(UUID, UUID) - Method in interface eu.etaxonomy.cdm.api.service.IFeatureNodeService
Deprecated.
Adds the specified feature as a child node to the given feature node
addChildFeatureNode(UUID, UUID, int) - Method in interface eu.etaxonomy.cdm.api.service.IFeatureNodeService
Deprecated.
Adds the specified feature as a child node to the given feature node at the given position
addChildNode(UUID, UUID) - Method in interface eu.etaxonomy.cdm.api.service.ITermNodeService
Adds the specified term as a child node to the given term node
addChildNode(UUID, UUID, int) - Method in interface eu.etaxonomy.cdm.api.service.ITermNodeService
Adds the specified term as a child node to the given term node at the given position
addChildNode(UUID, UUID) - Method in class eu.etaxonomy.cdm.api.service.TermNodeServiceImpl
 
addChildNode(UUID, UUID, int) - Method in class eu.etaxonomy.cdm.api.service.TermNodeServiceImpl
 
addChildNode(TaxonNode, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
addChildNode(TaxonNode, int, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
addChildNode(TaxonNode, Reference, String) - Method in interface eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode
Adds a taxon node as a child of the ITreeNode at the last position.
addChildNode(TaxonNode, int, Reference, String) - Method in interface eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode
Adds a taxon node as a child of this ITreeNode at the index position.
addChildNode(TaxonNode, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Moves a taxon node to a new parent.
addChildNode(TaxonNode, int, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Inserts the given taxon node in the list of children of this taxon node at the given (index + 1) position.
addChildren(List<OrderHelper>) - Method in class eu.etaxonomy.cdm.io.cdmLight.OrderHelper
 
addChildTaxon(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
addChildTaxon(Taxon, int, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
addChildTaxon(Taxon, Reference, String) - Method in interface eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode
Adds a taxon as a child of the ITreeNode at the last position.
addChildTaxon(Taxon, int, Reference, String) - Method in interface eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode
Adds a taxon as a child of the ITreeNode at the index position.
addChildTaxon(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
 
addChildTaxon(Taxon, int, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
 
addCitation(Reference) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addClass(Class<? extends IMatchable>) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addCollectingArea(NamedArea) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addCollectingArea(NamedArea) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
Further collecting areas.
addCollectingAreas(Collection<NamedArea>) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addCollectionAndType(String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportState
 
addCollectionMapping(CollectionExportMapping<STATE, CONFIG, TRANSFORM>) - Method in class eu.etaxonomy.cdm.io.common.mapping.out.CdmDbExportMapping
 
addContent(Element, Element) - Static method in class eu.etaxonomy.cdm.print.XMLHelper
Adds an element as a child to another element
addContent(Element, String, Element) - Static method in class eu.etaxonomy.cdm.print.XMLHelper
Adds an element to the child element of another element using the given name to select the child element
addContigFile(DerivateDataDTO.Link) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO.MolecularData
 
addContinent(NamedArea) - Method in class eu.etaxonomy.cdm.model.location.Country
 
addCount(StatisticsTypeEnum, Long) - Method in class eu.etaxonomy.cdm.api.service.statistics.Statistics
 
addCountry(Country) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
addCoveredTaxon(Taxon) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a taxa to the set of covered taxa corresponding to this identification key.
addCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a taxa to the set of covered taxa corresponding to this identification key.
addCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a taxa to the set of covered taxa corresponding to this identification key.
addCredit(Credit) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addCredit(Credit, int) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addCredit(Credit) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addCredit(Credit, int) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addCriteria(Criteria, List<Criterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addCriteria(AuditQuery, List<AuditCriterion>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
addCurrentArea(NamedArea) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportState
 
addCustomPattern(CoordinateConverter.CustomPatternIn) - Method in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter
 
addDefaultAuditing(String) - Method in class eu.etaxonomy.cdm.database.update.SimpleSchemaUpdaterStep
Defines a further non audited table name for computing the audited query.
addDefaultStrategyForClass(Class<S>) - Method in class eu.etaxonomy.cdm.strategy.match.SubClassMatchStrategy
 
addDeletedObject(CdmBase) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addDeletedObjects(Set<CdmBase>) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addDeletedRecord(String) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addDeletedRecord(CdmBase) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addDeletedRecords(String, int) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addDerivate(DerivateDTO) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDTO
 
addDerivate(DerivedUnit, SpecimenImportConfiguratorBase) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addDerivate(DerivedUnit, DerivedUnit, SpecimenImportConfiguratorBase) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addDerivationEvent(DerivationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDerivative(DerivedUnit) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Adds a new output specimen or observation for this derivation event.
addDerivedUnitDefinition(String, Language) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addDerivedUnitMedia(Media) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addDerivedUnitPoint(Point) - Method in class eu.etaxonomy.cdm.ext.geo.OccurrenceServiceRequestParameterDto
 
addDescription(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptiveDataSet
Adds an existing description to the set of descriptions of this working set.
addDescription(T) - Method in interface eu.etaxonomy.cdm.model.description.IDescribable
Adds a new description to the set of descriptions attached to this IDescribable.
addDescription(LanguageString) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addDescription(TaxonNameDescription) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Adds a new taxon name description to the set of taxon name descriptions assigned to this taxon name.
addDescription(TaxonNameDescription) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Adds a new taxon name description to the set of taxon name descriptions assigned to this taxon name.
addDescription(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
Adds a new description to this specimen or observation
addDescription(TaxonDescription) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds a new taxon description to the set of taxon descriptions assigned to this (accepted/correct) taxon.
addDescriptionElement(Taxon, ELEMENT) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportDescriptionElementCreationMapperBase
Adds a description element to the taxon's first description which is not an image gallery.
addDescriptionElement(Taxon, TextData) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportImageCreationMapper
 
addDescriptionSource(Reference) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Deprecated.
addDescriptiveDataSet(DescriptiveDataSet) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
addDetailImage(URI, String) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO
 
addDetailImageUuid(UUID) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO
 
addDetermination(DeterminationEvent) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addDetermination(DeterminationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDeterminedNames(Set<DeterminationEvent>) - Method in class eu.etaxonomy.cdm.api.service.dto.PreservedSpecimenDTO
 
addDoc(Document) - Method in class eu.etaxonomy.cdm.api.service.search.DocumentSearchResult
 
addDuplicate(Collection, String, String, TaxonName, PreservationMethod) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
Creates a duplicate specimen which derives from the same derivation event as the facade specimen and adds collection data to it (all data available in DerivedUnit and Specimen.
addDuplicate(DerivedUnit) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addDuplicateEntity(EntityCacherDebugResult.CdmEntityInfo, EntityCacherDebugResult.CdmEntityInfo) - Method in class eu.etaxonomy.cdm.cache.EntityCacherDebugResult
 
addElement(DescriptionElementBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Adds an existing elementary description to the set of elementary description data which constitute this description as a whole.
addElements(DescriptionElementBase...) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Convenience method to add multiple elements.
addEmailAddress(String) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addEmailAddress(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
ADDENDA - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
addEntityConstraintViolation(EntityConstraintViolation) - Method in class eu.etaxonomy.cdm.model.validation.EntityValidation
 
addEntityNotInCache(EntityCacherDebugResult.CdmEntityInfo) - Method in class eu.etaxonomy.cdm.cache.EntityCacherDebugResult
 
addError(String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addError(String, Exception) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addError(String, int) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addError(String, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addError(String, Exception, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addError(String, Exception, String, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addError(String, SchemaUpdaterStepBase, String) - Method in class eu.etaxonomy.cdm.database.update.SchemaUpdateResult
 
addError(String, CdmExportBase<?, ?, ?, ?>, String) - Method in class eu.etaxonomy.cdm.io.common.ExportResult
 
addErrorMessageToServletContextAttributes(String) - Method in class eu.etaxonomy.cdm.remote.config.AbstractWebApplicationConfigurer
 
addExample(Criteria, T, Set<String>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
addException(Exception) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addException(Exception) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addException(Exception, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addException(Exception, String, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addException(Exception, String, String, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addException(Exception, String, SchemaUpdaterStepBase, String) - Method in class eu.etaxonomy.cdm.database.update.SchemaUpdateResult
 
addException(String, Exception) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addExceptions(Collection<Exception>) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addExistingRecord(CdmBase) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoBase
 
addExistingRecord(CdmBase) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
addExistingRecord(DwcaTaxExportFile, CdmBase) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportState
 
addExistingRecordUuid(CdmBase) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoBase
 
addExistingRecordUuid(CdmBase) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
addExistingRecordUuid(CdmBase) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportState
 
addExportData(byte[]) - Method in class eu.etaxonomy.cdm.io.common.ExportDataWrapper
 
addExportData(byte[]) - Method in class eu.etaxonomy.cdm.io.common.ExportResult
 
addExtension(String, String) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelRowBase
 
addExtension(String, ExtensionType) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addExtension(Extension) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addExtension(Extension) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addExtension(String, ExtensionType) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addFaxNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addFaxNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addFeatureData(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addFieldEntry(URI, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoMetaDataRecord
 
addFieldEntry(URI, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvMetaDataRecordRedlist
 
addFieldEntry(URI, String) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaMetaDataRecord
 
addFieldMatcher(FieldMatcher) - Method in class eu.etaxonomy.cdm.strategy.match.Matching
 
addFieldMatcher(FieldMatcher, boolean) - Method in class eu.etaxonomy.cdm.strategy.match.Matching
 
addFieldObjectDefinition(String, Language) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addFieldObjectMedia(Media) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addFieldPredicate(StringBuilder, String, Optional<String>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addFieldToDocument(String, String, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.IdFieldOptions
 
addFieldToDocument(String, String, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.SortFieldOptions
 
addFieldUnitPoint(Point) - Method in class eu.etaxonomy.cdm.ext.geo.OccurrenceServiceRequestParameterDto
 
addFieldUnitsToDelete(FieldUnit) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportState
 
addFilter(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.api.service.statistics.StatisticsConfigurator
 
addForeignDistributionItem(PresenceAbsenceTerm, String, String) - Method in class eu.etaxonomy.cdm.api.service.dto.CondensedDistribution
 
addFormatters(FormatterRegistry) - Method in class eu.etaxonomy.cdm.remote.config.CdmSpringMVCConfig
 
addGeneralizationOf(T) - Method in class eu.etaxonomy.cdm.model.term.DefinedTermBase
 
addGeoFilterArea(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.DescriptiveDataSet
 
addGeographicalScope(NamedArea) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addGeographicalScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a geoScope to the set of geogspatial scopes corresponding to this identification key.
addGeographicalScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a geoScope to the set of geogspatial scopes corresponding to this identification key.
addGeographicalScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a geoScope to the set of geogspatial scopes corresponding to this identification key.
addGeoScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
Adds a named area to the set of named areas delimiting the geospatial area where this taxon description is valid.
addGeoScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
Adds a named area to the set of named areas delimiting the geospatial area where this Classification is valid.
addGetMethods(String) - Method in class eu.etaxonomy.cdm.cache.CdmModelFieldPropertyFromClass
 
addGrantedAuthority(GrantedAuthority) - Method in class eu.etaxonomy.cdm.model.permission.Group
 
addGroupAuthority(String, GrantedAuthority) - Method in class eu.etaxonomy.cdm.api.service.GroupServiceImpl
 
addGroups(Criteria, List<Grouping>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
addHasMoreMembers(String) - Static method in class eu.etaxonomy.cdm.strategy.cache.agent.TeamDefaultCacheStrategy
Add the et al.
addHeterotypicSynonymName(TaxonName) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym to this taxon) using the given synonym name.
addHeterotypicSynonymName(TaxonName, Reference, String, HomotypicalGroup) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym to this taxon) using the given synonym name.
addHomotypicalGroupToStore(HomotypicalGroup) - Method in class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportState
 
addHomotypicSynonym(Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds the given synonym to this taxon, with the "is homotypic synonym of" relationship type and returns it.
addHomotypicSynonymName(TaxonName) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym to this taxon) using the given synonym name.
addHybridChild(INonViralName, HybridRelationshipType, String) - Method in interface eu.etaxonomy.cdm.model.name.INonViralName
Creates a new hybrid relationship to this non viral name.
addHybridChild(INonViralName, HybridRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Creates a new hybrid relationship to this botanical name.
addHybridParent(INonViralName, HybridRelationshipType, String) - Method in interface eu.etaxonomy.cdm.model.name.INonViralName
Creates a new hybrid relationship to this non viral name.
addHybridParent(INonViralName, HybridRelationshipType, Reference, String, String, NomenclaturalCodeEdition) - Method in interface eu.etaxonomy.cdm.model.name.INonViralName
Creates a new hybrid relationship to this non viral name.
addHybridParent(INonViralName, HybridRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addHybridParent(INonViralName, HybridRelationshipType, Reference, String, String, NomenclaturalCodeEdition) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addHybridRelationship(HybridRelationship) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Adds the given hybrid relationship to the set of hybrid relationships of both non-viral names involved in this hybrid relationship.
addIdentifier(Identifier) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addIdentifier(String, DefinedTerm) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addIdentifier(Integer, Identifier) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addIdentifier(Identifier) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addIdentifier(String, DefinedTerm) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
Create and add a new identifier.
addIdentifier(Identifier) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addIdentifier(Integer, Identifier) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
Adds an identifier at the given position.
addImagePart(DescriptionElementBase) - Static method in class eu.etaxonomy.cdm.api.utility.ImagesUtility
Deprecated.
not used by EDITor anymore
addImportReference(Reference) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenImportStateBase
 
addImportSource(String, String, Reference, String) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addImportSource(String, String, Reference, String) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addImportSource(String, String, Reference, String) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
Adds a source of type OriginalSourceType.Import to this object.
addInapplicableState(FeatureState) - Method in class eu.etaxonomy.cdm.model.term.TermNode
Adds an existing inapplicable state to the set of inapplicable states described in this feature node.
addInapplicableState(Feature, State) - Method in class eu.etaxonomy.cdm.model.term.TermNode
 
addIncludedTaxon(IncludedTaxaDTO.IncludedTaxon) - Method in class eu.etaxonomy.cdm.api.service.dto.IncludedTaxaDTO
 
addIncludedTaxon(UUID, List<UUID>, boolean) - Method in class eu.etaxonomy.cdm.api.service.dto.IncludedTaxaDTO
 
addIncludes(T) - Method in class eu.etaxonomy.cdm.model.term.DefinedTermBase
 
addIndigenousDistributionItem(PresenceAbsenceTerm, String, String) - Method in class eu.etaxonomy.cdm.api.service.dto.CondensedDistribution
 
addIndividualAssociation(Taxon, String, DerivedUnit) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addInfoMessage(String) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addInfraGenericPart(INonViralName, List<TaggedText>, String, String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.TaxonNameDefaultCacheStrategy
Default implementation for the infrageneric part of a name.
addInfraGenericPart(INonViralName, List<TaggedText>, String, String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameNoMarkerCacheStrategy
 
addInstitutionalMembership(InstitutionalMembership) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
addInstitutionalMembership(Institution, TimePeriod, String, String) - Method in class eu.etaxonomy.cdm.model.agent.Person
Adds a new membership of this person in an institution to the set of his institution memberships.
addInterceptors(InterceptorRegistry) - Method in class eu.etaxonomy.cdm.remote.config.CdmSpringMVCConfig
 
addIntextReference(IIntextReferenceTarget, String, String, String) - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
addIntextReference(IIntextReferenceTarget, int, int) - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
addIntextReference(IntextReference) - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
addIntextReference(IntextReference) - Method in interface eu.etaxonomy.cdm.model.common.IIntextReferencable
 
addIntextReference(IIntextReferenceTarget, String, String, String) - Method in interface eu.etaxonomy.cdm.model.common.IIntextReferencable
Adds an IntextReference and sets the text of the referenced entity.
NOTE: this will override any existing text.
addIntextReference(IIntextReferenceTarget, int, int) - Method in interface eu.etaxonomy.cdm.model.common.IIntextReferencable
Adds an
addIntextReference(IIntextReferenceTarget, IIntextReferencable, String, String, String) - Static method in class eu.etaxonomy.cdm.model.common.IntextReferenceHelper
 
addIntextReference(IIntextReferenceTarget, IIntextReferencable, int, int) - Static method in class eu.etaxonomy.cdm.model.common.IntextReferenceHelper
 
addIntextReference(IIntextReferenceTarget, String, String, String) - Method in class eu.etaxonomy.cdm.model.common.LanguageString
 
addIntextReference(IIntextReferenceTarget, int, int) - Method in class eu.etaxonomy.cdm.model.common.LanguageString
 
addIntextReference(IntextReference) - Method in class eu.etaxonomy.cdm.model.common.LanguageString
 
addInverseRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
addInverseRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
ADDITIONAL_PUBLICATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "additional_publication" feature.
addJsonElement(JSONObject, JsonConfig, String, Object) - Method in class eu.etaxonomy.cdm.remote.json.processor.bean.AbstractBeanProcessor
 
addKey(UnmatchedLeads.UnmatchedLeadsKey, PolytomousKeyNode) - Method in class eu.etaxonomy.cdm.io.markup.UnmatchedLeads
Adds a polytomous key node to the
addKeyRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a key representation to the set of key representations corresponding to this identification key.
addKnownField(String, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoRecordBase
 
addKnownField(TermUri) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoRecordBase
 
addKnownField(String, String) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
addKnownField(TermUri) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
addKnownField(String, String) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
addKnownField(TermUri) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
addLanguageData(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addLeveledArea(String, String) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenRow
 
addLimitAndStart(Criteria, Integer, Integer) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addLimitAndStart(Query, Integer, Integer) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addLimitAndStart(AuditQuery, Integer, Integer) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addLink(ExternalLink) - Method in class eu.etaxonomy.cdm.model.reference.OriginalSourceBase
 
addMapper(CdmAttributeMapperBase) - Method in class eu.etaxonomy.cdm.io.common.mapping.CdmIoMapping
 
addMapper(CdmAttributeMapperBase) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportMapping
 
addMapper(CdmAttributeMapperBase) - Method in class eu.etaxonomy.cdm.io.common.mapping.out.CollectionExportMapping
 
addMarkedAncestor(MarkedEntityDTO<Taxon>) - Method in class eu.etaxonomy.cdm.api.service.dto.TaxonInContextDTO
 
addMarker(Marker) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
addMarker(MarkerType, boolean) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
addMarker(Marker) - Method in interface eu.etaxonomy.cdm.model.common.IAnnotatableEntity
 
addMedia(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDTO
 
addMedia(Collection<T>) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
addMedia(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Adds a media to the list of media this description element is based on.
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.media.IdentifiableMediaEntity
 
addMedia(Media) - Method in interface eu.etaxonomy.cdm.model.media.IMediaEntity
Adds a media to this object
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.term.DefinedTermBase
 
addMediaAsMediaSpecimen(boolean) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenImportConfiguratorBase
 
addMediaToGallery(DescriptionBase, Media) - Static method in class eu.etaxonomy.cdm.api.utility.ImagesUtility
 
addMember(User) - Method in class eu.etaxonomy.cdm.model.permission.Group
 
addMetaRecord(CsvDemoMetaDataRecord) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoExportState
 
addMetaRecord(CsvMetaDataRecordRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportStateRedlist
 
addMetaRecord(DwcaMetaDataRecord) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportState
 
addMisappliedName(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship (with taxon relationship type "misapplied name for") instance where this taxon plays the target role and adds it to the set of taxon relationships to this taxon.
addModifier(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Adds a modifier to the set of modifiers used to qualify the validity of this description element.
addModifier(DefinedTerm) - Method in interface eu.etaxonomy.cdm.model.description.IModifiable
Adds a modifier to the set of modifiers used to qualify the validity of this state data.
addModifier(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.description.StateData
Adds a modifier to the set of modifiers used to qualify the validity of this state data.
addModifier(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
Adds a modifier to the set of modifiers used to qualify the validity of this statistical measurement value.
addModifyingText(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Deprecated.
should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method
addModifyingText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Deprecated.
should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method
addModifyingText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.StateData
Deprecated.
should follow the put semantic of maps, this method will be removed in v4.0 Use the putModifyingText method instead
addMultipleValues(List<Object>, CdmBase, String, List<Class>, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addMyColumns() - Method in class eu.etaxonomy.cdm.database.update.MapTableCreator
 
addMyColumns() - Method in class eu.etaxonomy.cdm.database.update.MnTableCreator
 
addName(TaxonName) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addNameRelationship(NameRelationship) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Adds an existing name relationship either to the set of relations to this taxon name or to the set of relations from this taxon name.
addNameRelationships(String, String, String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addNamespace(String, Class<? extends IIdentifiableEntity>) - Method in class eu.etaxonomy.cdm.model.common.LSIDAuthority
 
addNameTypeDesignation(TaxonName, Reference, String, String, NameTypeDesignationStatus, boolean, boolean, boolean, boolean) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates and adds a new name type designation to this taxon name's set of type designations.
addNameTypeDesignation(TaxonName, Reference, String, String, NameTypeDesignationStatus, boolean) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates and adds a new name type designation to this taxon name's set of type designations.
addNameTypeDesignation(TaxonName, Reference, String, String, NameTypeDesignationStatus, boolean, boolean, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Creates and adds a new name type designation to this taxon name's set of type designations.
addNameTypeDesignation(TaxonName, Reference, String, String, NameTypeDesignationStatus, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Creates and adds a new name type designation to this taxon name's set of type designations.
addNameValuePairTo(List<NameValuePair>, String, String) - Static method in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
Adds a BasicNameValuePair to the given List.
addNameValuePairTo(List<NameValuePair>, String, Object) - Static method in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
Adds a BasicNameValuePair to the given List.
addNewEntity(CdmBase) - Method in class eu.etaxonomy.cdm.cache.CdmTransientEntityCacher
 
addNewFeatureSorterLists(String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportState
Adds new lists to the feature sorter list maps using the given key.
addNewRecord(String) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addNewRecord(CdmBase) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addNewRecords(String, int) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addNewRecords(Class<? extends CdmBase>, int) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addNewTerm(TermType, UUID, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITermService
Creates a new term as a child of the given parent.
addNewTerm(TermType, UUID) - Method in interface eu.etaxonomy.cdm.api.service.IVocabularyService
Creates a new term as a direct child of the given vocabulary.
addNewTerm(TermType, UUID, boolean) - Method in class eu.etaxonomy.cdm.api.service.TermServiceImpl
 
addNewTerm(TermType, UUID) - Method in class eu.etaxonomy.cdm.api.service.VocabularyServiceImpl
 
addNoClassMatching(Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addNonMatching(FieldMatcher, Object, Object) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addNoTypeMatching(Enum<?>, Enum<?>) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addNullMatching(Object, Object) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addNumericFieldToDocument(String, Object, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.IdFieldOptions
 
addNumericFieldToDocument(String, Object, Document) - Method in class eu.etaxonomy.cdm.hibernate.search.SortFieldOptions
 
addObserver(IIoObserver) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
addObserver(IIoObserver) - Method in interface eu.etaxonomy.cdm.io.common.IIoObservable
Adds a new observer for this object.
addObserver(IIoObserver) - Method in class eu.etaxonomy.cdm.io.common.ImportHandlerBase
 
addObserver(IIoObserver) - Method in class eu.etaxonomy.cdm.io.common.ObservableBase
 
addObservers(Set<IIoObserver>) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
addObservers(Set<IIoObserver>) - Method in interface eu.etaxonomy.cdm.io.common.IIoObservable
Adds a set of new observer for this object.
addObservers(Set<IIoObserver>) - Method in class eu.etaxonomy.cdm.io.common.ObservableBase
 
addObservers(Set<IIoObserver>) - Method in class eu.etaxonomy.cdm.io.excel.stream.ExcelRecordStream
 
addObservers(Set<IIoObserver>) - Method in class eu.etaxonomy.cdm.io.stream.FilteredStream
 
addObservers(Set<IIoObserver>) - Method in interface eu.etaxonomy.cdm.io.stream.IItemStream
Add the observers for this item stream.
addOperation(CRUD) - Method in class eu.etaxonomy.cdm.model.permission.CdmAuthority
 
addOrder(Criteria, List<OrderHint>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addOrder(FullTextQuery, List<OrderHint>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addOrder(StringBuilder, String, List<OrderHint>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addOrder(AuditQuery, List<OrderHint>) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
addOrder(Criteria) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByDate
 
addOrder(Criteria) - Method in class eu.etaxonomy.cdm.persistence.query.Grouping
 
addOriginal(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Adds a new input specimen or observation for this derviation event.
addOriginalSource(ICdmBase, Object, String, Reference) - Method in class eu.etaxonomy.cdm.io.common.CdmImportBase
Adds an orginal source to a sourceable objects (implemented for Identifiable entity and description element.
addOriginalSource(ResultSet, CdmBase, String, String, Reference) - Method in class eu.etaxonomy.cdm.io.common.CdmImportBase
 
addOriginalSource(ResultSet, CREATE) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportObjectCreationMapperBase
TODO also implemented in CdmImportBase (reduce redundance)
addOriginalSource(ResultSet, SUPPLEMENT) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
 
addOriginalSource(Reference) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXImportConfigurator
 
addOriginalSourceId - Variable in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
 
addOriginalSpelling(TaxonName, Reference, String) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Deprecated.
in future original spellings will be stored with nomenclatural source so this method may be deleted then
addOriginalSpelling(TaxonName, Reference, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Deprecated.
addOriginalSpelling(List<TaggedText>, TaxonName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NameCacheStrategyBase
 
addOutputModule(IPublishOutputModule) - Method in class eu.etaxonomy.cdm.print.PublishConfigurator
Adds an output modules to this configurators list of output modules.
addPageSizeAndNumber(Query, Integer, Integer) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addPageSizeAndNumber(FullTextQuery, Integer, Integer) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addPageSizeAndNumber(AuditQuery, Integer, Integer) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addPageSizeAndNumber(Criteria, Integer, Integer) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase
 
addParentChild(Taxon, Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
Relates two taxa as parent-child nodes within a classification.
addParentTaxon(Taxon, STATE, boolean, Classification) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenImportBase
Add the hierarchy for a Taxon(add higher taxa)
addParsingProblem(ParserProblem) - Method in interface eu.etaxonomy.cdm.model.common.IParsable
Adds a parsing problem to the list of parsing problems
addParsingProblem(ParserProblem) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addParsingProblem(ParserProblem) - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
addParsingProblems(int) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
 
addParsingProblems(int) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addPartialMisappliedName(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship (with taxon relationship type "partial misapplied name for") instance where this taxon plays the target role and adds it to the set of taxon relationships to this taxon.
addPartialSynonym(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship instance with taxon relationship type partial synonym for where this taxon plays the target role and adds it to the set of taxon relationships to this taxon.
addPath(String) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addPhoneNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addPhoneNumber(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addPlantDescription(String, DerivedUnitFacade) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeFieldUnitCacheStrategy
 
addPrimaryMediaSource(Reference, String) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addPrimaryTaxonomicSource(Reference, String) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addPrimaryTaxonomicSource(Reference) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addPrimaryTaxonomicSource(Reference, String) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addPrimaryTaxonomicSource(Reference) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addPrimaryTaxonomicSource(Reference, String) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
Adds a source of type OriginalSourceType.PrimaryTaxonomicSource to this object.
addPrimaryTaxonomicSource(Reference) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
Adds a source of type OriginalSourceType.PrimaryTaxonomicSource to this object.
addPrimerLink(URI, String) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO.ContigFile
 
addProblem(int, ParserProblem) - Static method in enum eu.etaxonomy.cdm.strategy.parser.ParserProblem
 
addProblems(int, int) - Static method in enum eu.etaxonomy.cdm.strategy.parser.ParserProblem
 
addProjection(ProjectionList) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByCount
 
addProjection(ProjectionList) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByDate
 
addProjection(ProjectionList) - Method in class eu.etaxonomy.cdm.persistence.query.Grouping
 
addProParteMisappliedName(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship (with taxon relationship type "pro parte misapplied name for") instance where this taxon plays the target role and adds it to the set of taxon relationships to this taxon.
addProparteSynonym(Taxon, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship (with taxon relationship type "pro parte synonym for") instance where this taxon plays the target role and adds it to the set of taxon relationships to this taxon.
addPropertyChangeListener(PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
see PropertyChangeSupport.addPropertyChangeListener(PropertyChangeListener)
addPropertyChangeListener(String, PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
see PropertyChangeSupport.addPropertyChangeListener(String, PropertyChangeListener)
addProtocolHeader(String, String) - Method in class eu.etaxonomy.cdm.api.service.lsid.impl.LsidStandardPortImpl
Method addProtocolHeader.
addProviderLink(DerivateDataDTO.Link) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO
 
addQuantitativeData(Feature) - Method in class eu.etaxonomy.cdm.api.service.dto.RowWrapperDTO
 
addQuestionText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
This is a convenience method to sets the question text for this node in the given language.
addRecommendedMeasurementUnit(MeasurementUnit) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a statistical measure to the set of recommended statistical measures assigned to this feature.
addRecommendedModifierEnumeration(TermVocabulary<DefinedTerm>) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a term vocabulary (with modifiers) to the set of recommended modifier vocabularies assigned to this feature.
addRecommendedStatisticalMeasure(StatisticalMeasure) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a statistical measure to the set of recommended statistical measures assigned to this feature.
addReference(Reference) - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
addReferencedEntities(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addReferenceToStore(Reference) - Method in class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportState
 
addRelatedObject(CdmBase) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addRelatedObject(Object, String, CdmBase) - Method in class eu.etaxonomy.cdm.io.common.DbImportStateBase
 
addRelatedObject(Object, String, CdmBase) - Method in interface eu.etaxonomy.cdm.io.common.IPartitionedState
 
addRelatedObject(String, String, IdentifiableEntity<?>) - Method in class eu.etaxonomy.cdm.io.stream.StreamImportStateBase
 
addRelatedObjects(Set<? extends CdmBase>) - Method in class eu.etaxonomy.cdm.api.service.DeleteResult
 
addRelatedObjet(Object, String, CdmBase) - Method in class eu.etaxonomy.cdm.io.common.RelatedObjectsHelper
Adds a related object to the underlying map.
addRelation(TaxonRelationshipsDTO.TaxonRelationDTO) - Method in class eu.etaxonomy.cdm.api.service.dto.TaxonRelationshipsDTO
 
addRelation(TaxonRelationship, RelationshipBase.Direction, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.dto.TaxonRelationshipsDTO
 
addRelationship(T) - Method in interface eu.etaxonomy.cdm.model.common.IRelated
 
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Deprecated.
to be used by RelationshipBase only
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Deprecated.
addRelationshipFromName(TaxonName, NameRelationshipType, String, NomenclaturalCodeEdition) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates a new name relationship from another taxon name to this taxon name and adds it both to the set of relations to this taxon name and to the set of relations from the other taxon name.
addRelationshipFromName(TaxonName, NameRelationshipType, Reference, String, String, NomenclaturalCodeEdition) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates a new name relationship from another taxon name to this taxon name and adds it both to the set of relations to this taxon name and to the set of relations from the other taxon name.
addRelationshipFromName(TaxonName, NameRelationshipType, String, NomenclaturalCodeEdition) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addRelationshipFromName(TaxonName, NameRelationshipType, Reference, String, String, NomenclaturalCodeEdition) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addRelationshipToName(TaxonName, NameRelationshipType, String, NomenclaturalCodeEdition) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates a new name relationship from this taxon name to another taxon name and adds it both to the set of relations from this taxon name and to the set of relations to the other taxon name.
addRelationshipToName(TaxonName, NameRelationshipType) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates a new name relationship from this taxon name to another taxon name and adds it both to the set of relations from this taxon name and to the set of relations to the other taxon name.
addRelationshipToName(TaxonName, NameRelationshipType, Reference, String, String, NomenclaturalCodeEdition) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates a new name relationship from this taxon name to another taxon name and adds it both to the set of relations from this taxon name and to the set of relations to the other taxon name.
addRelationshipToName(TaxonName, NameRelationshipType, String, NomenclaturalCodeEdition) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addRelationshipToName(TaxonName, NameRelationshipType) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addRelationshipToName(TaxonName, NameRelationshipType, Reference, String, String, NomenclaturalCodeEdition) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addReplacedSynonym(TaxonName, Reference, String, String, NomenclaturalCodeEdition) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Assigns a taxon name as replaced synonym of this taxon name and keeps the nomenclatural rule considered for it.
addReplacedSynonym(TaxonName, Reference, String, String, NomenclaturalCodeEdition) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Assigns a taxon name as replaced synonym of this taxon name and keeps the nomenclatural rule considered for it.
addReport(String) - Method in interface eu.etaxonomy.cdm.common.monitor.IRemotingProgressMonitor
Adds a report generated by the monitored job
addReport(String) - Method in class eu.etaxonomy.cdm.common.monitor.RemotingProgressMonitor
 
addReport(byte[]) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addReport(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaResultWriter
 
addRepresentation(Representation, Representation) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
addRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.description.DescriptiveDataSet
 
addRepresentation(MediaRepresentation) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.term.TermBase
 
addRepresentation(Representation) - Method in class eu.etaxonomy.cdm.persistence.dto.AbstractTermDto
 
addRepresentationPart(MediaRepresentationPart) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
Address - Class in eu.etaxonomy.cdm.model.agent
This class represents atomized postal addresses.
addresses - Variable in class eu.etaxonomy.cdm.model.agent.Contact
 
addRestrictions(boolean, Classification, TaxonNode, boolean, Set<UUID>, Query) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.TaxonDaoHibernateImpl
 
addRights(Rights) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addRights(Rights) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntity
 
addRowWrapperToDataset(Collection<SpecimenNodeWrapper>, UUID) - Method in class eu.etaxonomy.cdm.api.service.DescriptiveDataSetService
 
addRowWrapperToDataset(Collection<SpecimenNodeWrapper>, UUID) - Method in interface eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService
Creates a SpecimenRowWrapperDTO from the given SpecimenNodeWrapper.
This service method is used when adding new specimen to the character matrix resp.
addRowWrapperToDataset(Collection<SpecimenNodeWrapper>, UUID) - Method in interface eu.etaxonomy.cdm.api.service.longrunningService.ILongRunningTasksService
addRowWrapperToDataset(Collection<SpecimenNodeWrapper>, UUID) - Method in class eu.etaxonomy.cdm.api.service.longrunningService.LongRunningTasksService
 
addRule(TagEnum, String) - Method in class eu.etaxonomy.cdm.strategy.cache.HTMLTagRules
 
addSchemaAdapter(SchemaAdapterBase) - Method in class eu.etaxonomy.cdm.ext.common.ServiceWrapperBase
 
addScope(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
Adds a scope (mostly a life stage or a sex) to the set of scopes restricting the validity of this taxon description.
addScopeRestriction(DefinedTerm) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addScopeRestriction(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a scope restriction to the set of scope restrictions corresponding to this identification key.
addScopeRestriction(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a scope restriction to the set of scope restrictions corresponding to this identification key.
addScopeRestriction(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a scope restriction to the set of scope restrictions corresponding to this identification key.
addSelectedTaxonNodeElements(Element) - Method in class eu.etaxonomy.cdm.print.PublishConfigurator
Add a taxon node element to list of taxon nodes that will be processed by the print publisher.
addSeparator(String) - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
addSequence(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
addSession(Session) - Static method in class eu.etaxonomy.cdm.persistence.hibernate.PostMergeEntityListener
 
addSets(ModelAndView) - Method in class eu.etaxonomy.cdm.remote.controller.oaipmh.AbstractOaiPmhController
Subclasses should override this method and add a collection of eu.etaxonomy.cdm.remote.dto.oaipmh.Set objects called "sets" that will be returned in the response
addSets(ModelAndView) - Method in class eu.etaxonomy.cdm.remote.controller.oaipmh.ReferenceOaiPmhController
 
addSets(ModelAndView) - Method in class eu.etaxonomy.cdm.remote.controller.oaipmh.TaxonOaiPmhController
 
addShortDescription(StringBuffer) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addShortDescription(StringBuffer) - Method in class eu.etaxonomy.cdm.io.common.ExportResult
 
addSingleRead(SingleRead) - Method in class eu.etaxonomy.cdm.model.molecular.AmplificationResult
 
addSingleRead(SingleRead) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
Convenience method to add a single read to a consensus sequence by creating a SingleReadAlignment.
addSingleReadAlignment(SingleReadAlignment) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addSource(IdentifiableSource) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
addSource(OriginalSourceType, Reference, String, String) - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
Creates an orignal source or type , adds it to the specimen and returns it.
addSource(Reference, Synonym) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addSource(Reference, IndividualsAssociation) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addSource(Reference, Taxon) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addSource(Reference, TaxonName) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addSource(Reference, TextData) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addSource(Reference, TaxonDescription) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addSource(Reference, TextData, TaxonName, Reference) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXAddSources
 
addSource(IdentifiableSource) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addSource(SOURCE) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addSource(OriginalSourceType, String, String, Reference, String) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addSource(OriginalSourceType, Reference, String, String) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addSource(DescriptionElementSource) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addSource(OriginalSourceType, String, String, Reference, String) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addSource(OriginalSourceType, Reference, String, String) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addSource(OriginalSourceType, String, String, Reference, String, TaxonName, String) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Adds a source to this description element.
addSource(T) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
Adds a source to this object
addSource(OriginalSourceType, String, String, Reference, String) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
Adds a source that is newly created by its components.
addSource(OriginalSourceType, Reference, String, String) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
 
addSourcedEntities(Collection<T>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addSources(Set<DescriptionElementSource>) - Method in class eu.etaxonomy.cdm.api.service.description.DistributionAggregation.StatusAndSources
 
addSources(Set<IdentifiableSource>) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addSources(Set<SOURCE>) - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
addSources(Set<DescriptionElementSource>) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addSources(Set<T>) - Method in interface eu.etaxonomy.cdm.model.reference.ISourceable
Adds a set of original sources (citations) for this sourceable object
addSourcesDeduplicated(Set<DescriptionElementSource>, Set<DescriptionElementSource>) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
addSpecimenScan(URI, String) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO
 
addSpecimenScanUuid(UUID) - Method in class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO
 
addSpecimenToStore(SpecimenOrObservationBase<?>) - Method in class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportState
 
addSpecimenTypeDesignation(DerivedUnit, SpecimenTypeDesignationStatus, Reference, String, String, boolean, boolean) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates and adds a new specimen type designation to this taxon name's set of type designations.
addSpecimenTypeDesignation(DerivedUnit, SpecimenTypeDesignationStatus, Reference, String, String, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Creates and adds a new specimen type designation to this taxon name's set of type designations.
addSpecimenTypeDesignation(SpecimenTypeDesignation) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnit
 
addStateData(StateData) - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
Adds a state to the list of states describing the feature corresponding to this categorical data.
addStateData(State) - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
Convenience method which creates a state data from a given state with no modifiers and adds it to the list of state data
addStatementText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
This is a convenience method to set the statement text for this node in the given language.
addStatisticalValue(StatisticalMeasurementValue) - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
Adds a statistical measurement value to the set of statistical measurement values describing the feature corresponding to this quantitative data.
addStatus(TypeDesignationStatusBase) - Method in class eu.etaxonomy.cdm.api.service.dto.TypeDesignationStatusFilter
 
addStatus(NomenclaturalStatus) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Adds a new nomenclatural status to this taxon name's set of nomenclatural status.
addStatus(NomenclaturalStatusType, Reference, String) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
 
addStatus(NomenclaturalStatus) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Adds a new nomenclatural status to this taxon name's set of nomenclatural status.
addStatus(NomenclaturalStatusType, Reference, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addStringValue(ResultSet, CdmBase, String, String, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addSubArea(CondensedDistributionComposerBase.AreaNode) - Method in class eu.etaxonomy.cdm.ext.geo.CondensedDistributionComposerBase.AreaNode
 
addSubFeature(FeatureSorterInfo) - Method in class eu.etaxonomy.cdm.io.markup.FeatureSorterInfo
 
addSubResult(MatchResult) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addSubResult(String, MatchResult) - Method in class eu.etaxonomy.cdm.strategy.match.MatchResult
 
addSupplement(Annotation, AnnotatableEntity, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportAnnotationCreationMapper
 
addSupplement(Extension, IdentifiableEntity, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportExtensionCreationMapper
 
addSupplement(Marker, AnnotatableEntity, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportMarkerCreationMapper
 
addSupplement(SUPPLEMENT, SUPPLEMENTABLE, String) - Method in class eu.etaxonomy.cdm.io.common.mapping.DbImportSupplementCreationMapperBase
Adds the supplement to the supplementable entity.
addSupportedCategoricalEnumeration(TermVocabulary<State>) - Method in class eu.etaxonomy.cdm.model.description.Feature
Adds a term vocabulary to the set of supported state vocabularies assigned to this feature.
addSynonym(EntityDTO<Synonym>) - Method in class eu.etaxonomy.cdm.api.service.dto.TaxonInContextDTO
 
addSynonym(Synonym) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addSynonym(Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Might be public in future.
addSynonym(Synonym, SynonymType) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds the given synonym to this taxon and changes the synonym type before.
addSynonymName(TaxonName, SynonymType) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym to this taxon) using the given synonym name and with the given synonym type.
addSynonymName(TaxonName, Reference, String, SynonymType) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym to this taxon) using the given synonym name and with the given synonym type.
addSynonyms(Collection<Synonym>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addTaxa(Collection<Taxon>) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addTaxon(Taxon) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
addTaxon(Taxon) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addTaxonBase(TaxonBase) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
addTaxonBase(TaxonBase) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Adds a new taxon base to the set of taxon bases using this taxon name.
addTaxonBase(TaxonBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Adds a new taxon base to the set of taxon bases using this taxon name.
addTaxonBases(Collection<TaxonBase<?>>) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
addTaxonImage(Taxon, DescriptionBase<?>, ImageFile) - Static method in class eu.etaxonomy.cdm.api.utility.ImagesUtility
Deprecated.
not used by EDITor anymore
addTaxonNode(TaxonNode) - Method in class eu.etaxonomy.cdm.io.specimen.abcd206.in.SpecimenImportReport
 
addTaxonNode(Taxon, STATE, boolean) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenImportBase
 
addTaxonNode(TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
 
addTaxonNodeAgentRelation(UUID, UUID, DefinedTerm) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonNodeService
 
addTaxonNodeAgentRelation(UUID, UUID, DefinedTerm) - Method in class eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl
 
addTaxonomicChildrenMedia(Boolean, Boolean, Boolean, Taxon, Set<TaxonRelationshipEdge>, List<Media>) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonPortalController
 
addTaxonomicScope(Taxon) - Method in interface eu.etaxonomy.cdm.model.description.IIdentificationKey
 
addTaxonomicScope(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Adds a taxa to the set of taxonomic scopes corresponding to this identification key.
addTaxonomicScope(Taxon) - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Adds a taxa to the set of taxonomic scopes corresponding to this identification key.
addTaxonomicScope(Taxon) - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Adds a taxa to the set of taxonomic scopes corresponding to this identification key.
addTaxonRelation(TaxonRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds an existing taxon relationship either to the set of taxon relationships to this taxon or to the set of taxon relationships from this taxon.
addTaxonRelation(Taxon, TaxonRelationshipType, Reference, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship instance where this taxon plays the source role and adds it to the set of "taxon relationships from" belonging to this taxon.
addTaxonSubtree(TaxonNode) - Method in class eu.etaxonomy.cdm.model.description.DescriptiveDataSet
 
addTdwgArea(NamedArea) - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
addTeamMember(Person) - Method in class eu.etaxonomy.cdm.model.agent.Team
Adds a new person to this team at the end of the members' list.
addTeamMember(Person, int) - Method in class eu.etaxonomy.cdm.model.agent.Team
Adds a new person to this team at the given index place of the members' list.
addTerm(Class<? extends IEnumTerm<?>>, S, UUID, String, String, S) - Static method in class eu.etaxonomy.cdm.model.term.EnumeratedTermVoc
 
addTerm(T) - Method in class eu.etaxonomy.cdm.model.term.OrderedTermVocabulary
Adds a term to the the end / lowest
addTerm(T) - Method in class eu.etaxonomy.cdm.model.term.TermVocabulary
 
addTerm(TermDto) - Method in class eu.etaxonomy.cdm.persistence.dto.TermCollectionDto
 
addTermAbove(T, T) - Method in class eu.etaxonomy.cdm.model.term.OrderedTermVocabulary
 
addTermBelow(T, T) - Method in class eu.etaxonomy.cdm.model.term.OrderedTermVocabulary
 
addTermEqualLevel(T, T) - Method in class eu.etaxonomy.cdm.model.term.OrderedTermVocabulary
 
addTermUuid(UUID) - Method in class eu.etaxonomy.cdm.database.update.TermMover
 
addTextualTypeDesignation(String, Language, boolean, Reference, String, String, boolean) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Creates and adds a new textual type designation to this taxon name's set of type designations.
addTextualTypeDesignation(String, Language, boolean, Reference, String, String, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
addThing(BaseThing) - Method in class eu.etaxonomy.remote.dto.rdf.Rdf
 
addToAcceptedTaxontUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch.NameSearchResponse
 
addToCycleSet(Object) - Method in class net.sf.json.CycleSetAcess
 
addToNameUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch.NameSearchResponse
 
addToNomenclatureStaus(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addToRelatedTaxa(String, String, String, UUID, String, String, String, String, String, String, String, String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.TaxonInformation.TaxonInformationResponse
 
addToResponse(String, String, DerivedUnitFacade) - Method in class eu.etaxonomy.cdm.remote.dto.occurrencecatalogue.OccurrenceSearch
 
addToResponseList(String, String, String, Map<String, Map>) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.AcceptedNameSearch
 
addToResponseList(String, String, float, String, Set<TaxonBase>, Set<TaxonBase>) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch
 
addToResponseList(String, String, float, String, String[], String[]) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch
 
addToResponseRelatedTaxa(String, String, String, UUID, String, String, String, String, String, String, String, String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.TaxonInformation
 
addToResponseTaxonInfo(Set<TaxonBase>) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation
 
addToSetWithChangeEvent(Set<T>, T, String) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
Adds an item to a set of this object and fires the according PropertyChangeEvent.
addToSourceMap(Map<String, OriginalSourceBase<?>>, Set<OriginalSourceBase>) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenImportBase
 
addToTaxonConceptUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameSearch.NameSearchResponse
 
addToTaxonLsids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addToTaxonUuids(String) - Method in class eu.etaxonomy.cdm.remote.dto.namecatalogue.NameInformation.NameInformationResponse
 
addToTotalCount(long) - Method in class eu.etaxonomy.cdm.api.service.search.MassIndexerProgressMonitorWrapper
 
addType(StatisticsTypeEnum) - Method in class eu.etaxonomy.cdm.api.service.statistics.StatisticsConfigurator
 
addType(DefinedTerm) - Method in class eu.etaxonomy.cdm.model.agent.Institution
Adds a new institutional type (from the corresponding vocabulary) to the set of institution types of this institution.
addType(DescriptionType) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
addTypeDesigations(CdmBase, TypeDesignationBase...) - Method in class eu.etaxonomy.cdm.api.service.name.TypeDesignationSetManager
Add one or more TypeDesignations to the manager.
addTypeDesignation(UUID, UUID) - Method in interface eu.etaxonomy.cdm.api.service.IRegistrationService
 
addTypeDesignation(Registration, UUID) - Method in interface eu.etaxonomy.cdm.api.service.IRegistrationService
 
addTypeDesignation(UUID, UUID) - Method in class eu.etaxonomy.cdm.api.service.RegistrationServiceImpl
 
addTypeDesignation(Registration, UUID) - Method in class eu.etaxonomy.cdm.api.service.RegistrationServiceImpl
 
addTypeDesignation(TypeDesignationBase<?>, boolean) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
Adds a type designation to this taxon name's set of type designations
addTypeDesignation(TypeDesignationBase) - Method in class eu.etaxonomy.cdm.model.name.Registration
 
addTypeDesignation(TypeDesignationBase<?>, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Adds a type designation to this taxon name's set of type designations
addTypeDesignations(List<TypeDesignationBase<?>>) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
addTypeRestriction(Query, Class<? extends CdmBase>) - Static method in class eu.etaxonomy.cdm.api.service.search.QueryFactory
Creates a class restriction query and wraps the class restriction query and the given query into a BooleanQuery where both must match.
addTypes(String, List<String>) - Method in class eu.etaxonomy.cdm.api.service.dto.PreservedSpecimenDTO
 
addTypes(Set<DescriptionType>) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
addTypifiedName(TaxonName) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Adds a new taxon name to the set of taxon names that belong to this homotypical group.
addTypifiedName(TaxonName) - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Deprecated.
for bidirectional use only
addUnChangedObject(CdmBase) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addUnchangedObjects(Set<? extends CdmBase>) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addUnhandled(RisReferenceTag) - Method in class eu.etaxonomy.cdm.io.reference.ris.in.RisReferenceImportState
 
addUpdatedCdmId(CdmEntityIdentifier) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addUpdatedCdmIds(Set<CdmEntityIdentifier>) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addUpdatedObject(CdmBase) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addUpdatedObjects(Set<? extends CdmBase>) - Method in class eu.etaxonomy.cdm.api.service.UpdateResult
 
addUpdatedRecord(String) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addUpdatedRecord(CdmBase) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addUpdatedRecords(String, int) - Method in class eu.etaxonomy.cdm.io.common.ImportResult
 
addUrl(URI) - Method in class eu.etaxonomy.cdm.model.agent.AgentBase
 
addUrl(URI) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
addUsedSequences(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
 
addUser(User) - Method in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
addUserToGroup(String, String) - Method in class eu.etaxonomy.cdm.api.service.GroupServiceImpl
 
addValue(ResultSet, ICdmBase, String, String, Class<?>, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addValue(Object, ICdmBase, String, Class<?>, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addValue(T) - Method in class eu.etaxonomy.cdm.persistence.dao.common.Restriction
 
addWarning(String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addWarning(String, int) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addWarning(String, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addWarning(String, String, String) - Method in class eu.etaxonomy.cdm.common.IoResultBase
 
addWarning(String, SchemaUpdaterStepBase, String) - Method in class eu.etaxonomy.cdm.database.update.SchemaUpdateResult
 
addWhitespace() - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
addXmlBooleanValue(Element, CdmBase, String, Namespace, String) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlStringValue(Element, CdmBase, String, Namespace, String) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlStringValue(Element, CdmBase, String, Namespace, String, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlValue(Element, CdmBase, String, Namespace, String, Class<?>, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
addXmlValue(Element, CdmBase, String, Namespace, String, Class<?>, boolean, boolean) - Static method in class eu.etaxonomy.cdm.io.common.ImportHelper
 
ADMIN - Static variable in class eu.etaxonomy.cdm.model.permission.Operation
 
ADMIN - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.permission.Operation
 
ADMIN_GROUP_AUTHORITIES - Static variable in class eu.etaxonomy.cdm.api.application.FirstDataInserter
 
adminEmail - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
ADMINISTRATION_AREA() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaType
The boundaries depend on administration (county, state, reserve, etc.)
adminLogin - Static variable in class eu.etaxonomy.cdm.config.Configuration
Login name for the first user 'admin'
adminPassword - Static variable in class eu.etaxonomy.cdm.config.Configuration
Default password for the first user 'admin'
ADVANCED_NAME_SERVICE_URL - Static variable in interface eu.etaxonomy.cdm.ext.ipni.IIpniService
 
AdvancedBeanInitializer - Class in eu.etaxonomy.cdm.persistence.dao.initializer
For now this is a test if we can improve performance for bean initializing
AdvancedBeanInitializer() - Constructor for class eu.etaxonomy.cdm.persistence.dao.initializer.AdvancedBeanInitializer
 
ADYGHE_ADYGEI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFAR() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFGHANISTAN() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
AFRICA() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
AFRIHILI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFRIKAANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AFRO_ASIATIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
afterCompletion(HttpServletRequest, HttpServletResponse, Object, Exception) - Method in class eu.etaxonomy.cdm.remote.controller.interceptor.DatasourceContextHandlerInterceptor
Deprecated.
 
afterLast() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.database.UpdatableRoutingDataSource
Deprecated.
 
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.opt.config.LoggingConfigurer
 
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.PreferenceDaoImpl
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.remote.config.AbstractWebApplicationConfigurer
 
afterPropertiesSet() - Method in class eu.etaxonomy.cdm.remote.dto.assembler.DozerBeanMapperFactoryBean
 
afterTransactionCompletion(Transaction) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmHibernateInterceptor
 
AGENT_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
AgentBase<S extends IIdentifiableEntityCacheStrategy<? extends AgentBase<S>>> - Class in eu.etaxonomy.cdm.model.agent
The upmost (abstract) class for agents such as persons, teams or institutions.
AgentBase() - Constructor for class eu.etaxonomy.cdm.model.agent.AgentBase
 
AgentController - Class in eu.etaxonomy.cdm.remote.controller
The AgentController class is a Spring MVC Controller.
AgentController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AgentController
 
AgentDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.agent
 
AgentDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.agent.AgentDaoImpl
 
agentData - Variable in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
AgentListController - Class in eu.etaxonomy.cdm.remote.controller
The AgentListController class is a Spring MVC Controller.
AgentListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AgentListController
 
AgentPortalController - Class in eu.etaxonomy.cdm.remote.controller
 
AgentPortalController() - Constructor for class eu.etaxonomy.cdm.remote.controller.AgentPortalController
 
agents - Variable in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
agents - Variable in class eu.etaxonomy.cdm.io.sdd.out.SDDDataSet
 
agentService - Variable in class eu.etaxonomy.cdm.api.service.util.CacheUpdater
 
AgentServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
AgentServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.AgentServiceImpl
Constructor
aggregate(List<Integer>, IProgressMonitor) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
aggregateToParentTaxon(TaxonNode, DescriptionAggregationBase.ResultHolder, Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
aggregateToParentTaxon(TaxonNode, DescriptionAggregationBase.ResultHolder, Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.api.service.description.DistributionAggregation
 
aggregateToParentTaxon(TaxonNode, DescriptionAggregationBase.ResultHolder, Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.api.service.description.StructuredDescriptionAggregation
 
aggregateWithinSingleTaxon(Taxon, DescriptionAggregationBase.ResultHolder, Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
aggregateWithinSingleTaxon(Taxon, DescriptionAggregationBase.ResultHolder, Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.api.service.description.DistributionAggregation
 
aggregateWithinSingleTaxon(Taxon, DescriptionAggregationBase.ResultHolder, Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.api.service.description.StructuredDescriptionAggregation
 
AggregationMode - Enum in eu.etaxonomy.cdm.api.service.description
 
AggregationSourceMode - Enum in eu.etaxonomy.cdm.api.service.description
 
AggregationType - Enum in eu.etaxonomy.cdm.api.service.description
 
aggrOrGroup - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
aggrOrGroupMarker - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
aggrOrGroupPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AINU() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AKAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AKKADIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALBANIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALBANIAPEOPLESSOCIALISTREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
ALEUT() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALGERIAPEOPLESDEMOCRATICREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
ALGONQUIANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALL - Static variable in class eu.etaxonomy.cdm.model.permission.Operation
 
ALL - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.permission.Operation
 
ALL_RELATIONSHIPS() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
allABCDelements - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
allABCDelements - Variable in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXDataHolder
 
allGbifElements - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
allMisappliedNameTypes() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns a list of all misapplied name relationship types such as "misapplied name for" and "pro parte misapplied name for".
AllowNullUpdater - Class in eu.etaxonomy.cdm.database.update
 
AllowNullUpdater(List<ISchemaUpdaterStep>, String, String, String, boolean, Datatype, Integer) - Constructor for class eu.etaxonomy.cdm.database.update.AllowNullUpdater
 
allowsSecondNull(Object) - Method in enum eu.etaxonomy.cdm.strategy.match.MatchMode
 
allowWhiteSpace - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.CustomPatternIn
 
allPartialTypes() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
allProParteTypes() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
allSynonymTypes() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
AlphabeticallyAscendingNamedAreaComparator - Class in eu.etaxonomy.cdm.model.common
 
AlphabeticallyAscendingNamedAreaComparator() - Constructor for class eu.etaxonomy.cdm.model.common.AlphabeticallyAscendingNamedAreaComparator
 
ALTAIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ALTERNATEPUBTITLE - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
ALTERNATIVE() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "alternative".
ALTERNATIVE_ABBREVIATIONS - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
ALTERNATIVE_NAME() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "alternative name" name relationship type.
ALTERNATIVE_NAMES - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
AlternativeIdentifier(DefinedTerm, String) - Constructor for class eu.etaxonomy.cdm.api.service.dto.IdentifiedEntityDTO.AlternativeIdentifier
 
AlternativeSpellingSuggestionParser<T extends CdmBase> - Class in eu.etaxonomy.cdm.persistence.dao.hibernate
Deprecated.
Use current methods for alternative spelling suggestions. This class is no longer supported after migration to hibernate 4.x.
AlternativeSpellingSuggestionParser(Class<T>) - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.AlternativeSpellingSuggestionParser
Deprecated.
 
AlternativeTreeRoot - Class in eu.etaxonomy.cdm.model.taxon
 
AlternativeTreeRoot(TaxonNode, TaxonNode, Reference, String) - Constructor for class eu.etaxonomy.cdm.model.taxon.AlternativeTreeRoot
 
AlternativeUnitilsJUnit4TestClassRunner - Class in org.unitils
The CDM integration tests can not yet use the SpringJUnit4ClassRunner provided by the spring test framework.
AlternativeUnitilsJUnit4TestClassRunner(Class<?>) - Constructor for class org.unitils.AlternativeUnitilsJUnit4TestClassRunner
 
ALTITUDE - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
altitude - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
altitude - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
altitude - Variable in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXDataHolder
 
AMBIGUOUS() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "ambiguous".
AMERICANSAMOA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
AMHARIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
Amplification - Class in eu.etaxonomy.cdm.model.molecular
The physical process of amplification (also called PCR) extracts and replicates parts of the DNA of a given DNA Sample .
Amplification() - Constructor for class eu.etaxonomy.cdm.model.molecular.Amplification
 
AmplificationDaoHibernateImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.molecular
 
AmplificationDaoHibernateImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.molecular.AmplificationDaoHibernateImpl
 
AmplificationResult - Class in eu.etaxonomy.cdm.model.molecular
The physical process of amplification (also called PCR) extracts and replicates parts of the DNA of a given DNA Sample .
AmplificationResult() - Constructor for class eu.etaxonomy.cdm.model.molecular.AmplificationResult
 
AmplificationServiceImpl - Class in eu.etaxonomy.cdm.api.service.molecular
 
AmplificationServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.molecular.AmplificationServiceImpl
 
analyzeFeatures(STATE, ExcelTaxonOrSpecimenImportBase<STATE, CONFIG, ROW>.KeyValue) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
 
analyzeRecord(Map<String, String>, ExcelDistributionUpdateState) - Method in class eu.etaxonomy.cdm.io.distribution.excelupdate.ExcelDistributionUpdate
analyzeRecord(Map<String, String>, STATE) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelImportBase
 
analyzeRecord(Map<String, String>, STATE) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
 
analyzeRecord(Map<String, String>, MediaExcelImportState) - Method in class eu.etaxonomy.cdm.io.media.in.MediaExcelImport
analyzeRecord(Map<String, String>, SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.ExtensionTypeExcelImport
 
analyzeRecord(Map<String, String>, SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.NamedAreaLevelExcelImport
 
analyzeSingleValue(ExcelTaxonOrSpecimenImportBase<STATE, CONFIG, ROW>.KeyValue, STATE) - Method in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
Analyzes a single record value and fills the row instance accordingly.
analyzeSingleValue(ExcelTaxonOrSpecimenImportBase<TaxonExcelImportState, ExcelImportConfiguratorBase, ExcelRowBase>.KeyValue, TaxonExcelImportState) - Method in class eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImport
 
analyzeSingleValue(ExcelTaxonOrSpecimenImportBase<TaxonExcelImportState, ExcelImportConfiguratorBase, ExcelRowBase>.KeyValue, TaxonExcelImportState) - Method in class eu.etaxonomy.cdm.io.excel.taxa.TaxonListImport
Analyzes a single record value and fills the row instance accordingly.
analyzeSingleValue(ExcelTaxonOrSpecimenImportBase<SpecimenCdmExcelImportState, SpecimenCdmExcelImportConfigurator, SpecimenRow>.KeyValue, SpecimenCdmExcelImportState) - Method in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenCdmExcelImport
 
ANATOMY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "anatomy" feature.
ANDORRAPRINCIPALITYOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
andTaxonNode(TaxonNode) - Method in class eu.etaxonomy.cdm.filter.TaxonNodeFilter
 
ANGIKA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ANGOLAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
ANGUILLA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
AnnotatableDaoImpl<T extends AnnotatableEntity> - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
AnnotatableDaoImpl(Class<T>) - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl
 
AnnotatableEntity - Class in eu.etaxonomy.cdm.model.common
Abstract superclass implementing human annotations and machine markers to be assigned to CDM objects.
AnnotatableEntity() - Constructor for class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
AnnotatableServiceBase<T extends AnnotatableEntity,DAO extends IAnnotatableDao<T>> - Class in eu.etaxonomy.cdm.api.service
 
AnnotatableServiceBase() - Constructor for class eu.etaxonomy.cdm.api.service.AnnotatableServiceBase
 
ANNOTATION - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
Annotation - Class in eu.etaxonomy.cdm.model.common
 
Annotation() - Constructor for class eu.etaxonomy.cdm.model.common.Annotation
 
Annotation(String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.Annotation
Constructor
AnnotationConfiguration - Class in org.hibernate.cfg
Deprecated.
AnnotationConfiguration() - Constructor for class org.hibernate.cfg.AnnotationConfiguration
Deprecated.
 
AnnotationDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
AnnotationDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotationDaoImpl
 
annotations - Variable in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
AnnotationService - Class in eu.etaxonomy.cdm.api.service
 
AnnotationService() - Constructor for class eu.etaxonomy.cdm.api.service.AnnotationService
 
AnnotationType - Class in eu.etaxonomy.cdm.model.common
Annotation types ...
AnnotationType() - Constructor for class eu.etaxonomy.cdm.model.common.AnnotationType
Deprecated.
AnnotationType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.AnnotationType
Constructor
AnnotationTypeAutoInitializer - Class in eu.etaxonomy.cdm.persistence.dao.initializer
 
AnnotationTypeAutoInitializer() - Constructor for class eu.etaxonomy.cdm.persistence.dao.initializer.AnnotationTypeAutoInitializer
 
ANTARCTICA() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
ANTARCTICASOUTHOF60() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
ANTIGUAANDBARBUDA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
any - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.About
 
any - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Description
 
any - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Metadata
 
ANY_DASH_RE() - Static method in enum eu.etaxonomy.cdm.common.UTF8
 
anyBotanicFullName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyBotanicFullNamePattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyBotanicName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyEnd - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyFullName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anySepChar - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyZooFullName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyZooFullNamePattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
anyZooName - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
APACHES() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
apiDocs(String, HttpServletRequest, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.staticSwagger.StaticSwaggerApiDoc
 
apostropheWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
appContext - Variable in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
appContext - Variable in class eu.etaxonomy.cdm.api.service.ServiceBase
 
APPENDIX - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
ApplicationConfiguration - Class in eu.etaxonomy.cdm.api.config
 
ApplicationConfiguration() - Constructor for class eu.etaxonomy.cdm.api.config.ApplicationConfiguration
 
ApplicationConfigurationFile - Class in eu.etaxonomy.cdm.api.config
 
ApplicationConfigurationFile(String, String) - Constructor for class eu.etaxonomy.cdm.api.config.ApplicationConfigurationFile
 
applicationContext - Variable in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
applicationContext - Variable in class eu.etaxonomy.cdm.api.application.CdmRepository
 
applicationContext - Variable in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultExport
 
applicationContext - Variable in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport
 
apply() - Method in class eu.etaxonomy.cdm.api.application.AbstractRunAs
 
apply() - Method in interface eu.etaxonomy.cdm.api.application.IRunAs
 
apply(Object, String, Object) - Method in class eu.etaxonomy.cdm.remote.json.util.CardinalityPropertyFilter
 
apply(Object, String, Object) - Method in class eu.etaxonomy.cdm.remote.json.util.InitializedHibernatePropertyFilter
 
applyAndSplit(LinkedList<AbstractEllypsisFormatter.EllipsisData>, String, String) - Method in class eu.etaxonomy.cdm.format.AbstractEllypsisFormatter
 
applySubstitutionRules(String) - Method in class eu.etaxonomy.cdm.common.AbstractStringComparator
Applies the first matching substitutionRules set by #setSubstitutionRules() to the given String.
applyTo(Integer) - Method in enum eu.etaxonomy.cdm.model.media.MediaUtils.MissingValueStrategy
 
approvalStore() - Method in class eu.etaxonomy.cdm.remote.config.OAuth2ServerConfiguration.CommonBeans
 
ARABIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARAGONESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARAPAHO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARAWAK() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
Archive - Class in eu.etaxonomy.cdm.io.dwca.jaxb
Java class for anonymous complex type.
Archive() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.Archive
 
ArchiveEntryBase - Class in eu.etaxonomy.cdm.io.dwca.jaxb
 
ArchiveEntryBase() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.ArchiveEntryBase
 
ARCTICOCEAN() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
area - Variable in class eu.etaxonomy.cdm.ext.geo.CondensedDistributionComposerBase.AreaNode
 
AREA_CATEGORY1 - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AREA_CATEGORY2 - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AREA_CATEGORY3 - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AREA_LABEL - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AREA_NAME1 - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AREA_NAME2 - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AREA_NAME3 - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AREA_OF_INTREREST() - Static method in class eu.etaxonomy.cdm.model.common.ExtensionType
 
AreaNode(NamedArea) - Constructor for class eu.etaxonomy.cdm.ext.geo.CondensedDistributionComposerBase.AreaNode
 
areaPostTag - Variable in class eu.etaxonomy.cdm.ext.geo.CondensedDistributionComposerBase
 
areaPreTag - Variable in class eu.etaxonomy.cdm.ext.geo.CondensedDistributionComposerBase
 
areBlank(String...) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
 
areMatch(Object, Object) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmListenerDuplicationStrategy
 
ARGENTINAARGENTINEREPUBLIC() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
ARMENIA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
ARMENIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AROMANIAN_ARUMANIAN_MACEDOROMANIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARTIFICIAL_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARUBA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
asc(String, String) - Method in class eu.etaxonomy.cdm.persistence.query.GroupByDate
 
asGrantedAuthority(IGrantedAuthorityDao) - Method in class eu.etaxonomy.cdm.persistence.hibernate.permission.Role
WARNING: This method must only be used when there is nothing in hibernate to be flushed to the database.
ASIA_TEMPERATE() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
ASIA_TROPICAL() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
askAddParent(String) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askFeatureName(String) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askForClassification(Map<String, Classification>) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenUserInteraction
 
askForDescriptionGroup(Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenUserInteraction
 
askForRank(String, Rank, NomenclaturalCode) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askForReference(Map<String, Reference>) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenUserInteraction
 
askForSource(Map<String, OriginalSourceBase<?>>, String, String, IReferenceService, List<String>) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenUserInteraction
 
askIfNameContained(String) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askIfReuseBestMatchingTaxon(INonViralName, Taxon, Reference, double, double) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askMultiple(Node) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
ask user to specify what kind of paragraph the current "multiple" section is default possibilities are "synonyms","material examined","distribution","image caption","other" could make sense to replace this list with the CDM-Feature list if "other" is selected, a second pop-up will be prompted to ask user to specify a new Feature name.
askParent(Taxon, Classification) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
asks for the hierarchical parent, based on the current classification
askQuestion(String) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askRank(String, List<String>) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askSetParent(String) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
askWhereToFixData(String, List<TaxonBase>, Classification) - Method in class eu.etaxonomy.cdm.io.specimen.SpecimenUserInteraction
Look if the same name already exists in the ALL classifications and ask the user to select one or none.
askWhichScientificName(String, String, String, Node) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
asList() - Method in class eu.etaxonomy.cdm.persistence.query.OrderHint
 
asNewGrantedAuthority() - Method in class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
asNewGrantedAuthority() - Method in interface eu.etaxonomy.cdm.persistence.hibernate.permission.IGrantedAuthorityConverter
 
asNewGrantedAuthority() - Method in class eu.etaxonomy.cdm.persistence.hibernate.permission.Role
 
ASSAMESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
assemble(Serializable, Object) - Method in class eu.etaxonomy.cdm.hibernate.BigDecimalUserType
 
assemble(Serializable, Object) - Method in class eu.etaxonomy.cdm.hibernate.SeverityUserType
 
assemble(Serializable, Object) - Method in class eu.etaxonomy.cdm.hibernate.WSDLDefinitionUserType
 
assembleClassificationSet(CsvDemoExportConfigurator) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoExport
 
assembleFieldUnitDTO(FieldUnit) - Method in interface eu.etaxonomy.cdm.api.service.IOccurrenceService
Assembles a FieldUnitDTO for the given field unit.
assembleFieldUnitDTO(FieldUnit) - Method in class eu.etaxonomy.cdm.api.service.OccurrenceServiceImpl
 
assemblePreservedSpecimenDTO(DerivedUnit) - Method in interface eu.etaxonomy.cdm.api.service.IOccurrenceService
Assembles a PreservedSpecimenDTO for the given derived unit.
assemblePreservedSpecimenDTO(DerivedUnit) - Method in class eu.etaxonomy.cdm.api.service.OccurrenceServiceImpl
 
assemblePreservedSpecimenDTO(DerivedUnit, FieldUnitDTO) - Method in class eu.etaxonomy.cdm.api.service.OccurrenceServiceImpl
 
assembleTaxonNodeSet(CsvTaxExportConfiguratorRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportRedlist
 
asSet() - Method in class eu.etaxonomy.cdm.remote.editor.DefinedTermBaseList
 
asSet() - Method in class eu.etaxonomy.cdm.remote.editor.PointList
 
asSet() - Method in class eu.etaxonomy.cdm.remote.editor.term.EnumTermList
 
asSet() - Method in class eu.etaxonomy.cdm.remote.editor.UuidList
 
AssignmentStatus - Enum in eu.etaxonomy.cdm.persistence.query
Enum to indicate if the retrieved specimens are associated to a taxon.
associatedMedia - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedOccurrences - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedReferences - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedSequences - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
associatedTaxa - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
AssociatedTaxon() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.voc.InfoItem.AssociatedTaxon
 
AssociatedTaxon(TaxonConcept, boolean) - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.voc.InfoItem.AssociatedTaxon
 
associatedUnitIds - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
associateImageWithCdmBase(String, CdmBase) - Method in class eu.etaxonomy.cdm.io.sdd.in.SDDImport
 
assureIsPersisted(Registration) - Method in interface eu.etaxonomy.cdm.api.service.IRegistrationService
 
assureIsPersisted(Registration) - Method in class eu.etaxonomy.cdm.api.service.RegistrationServiceImpl
 
assureSingleTaxon(TaxonName) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxonGraph.AbstractHibernateTaxonGraphProcessor
 
assureSingleTaxon(TaxonName, boolean) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxonGraph.AbstractHibernateTaxonGraphProcessor
 
assureSingleTaxon(TaxonName) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxonGraph.ITaxonGraphDao
 
assureSingleTaxon(TaxonName, boolean) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxonGraph.ITaxonGraphDao
 
asTermList() - Method in interface eu.etaxonomy.cdm.model.term.ITermTree
 
asTermList() - Method in class eu.etaxonomy.cdm.model.term.TermTree
 
asTermListRecursive() - Method in class eu.etaxonomy.cdm.model.term.TermNode
 
ASTURIAN_BABLE_LEONESE_ASTURLEONESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
asURI() - Method in class eu.etaxonomy.cdm.common.DOI
 
asURI() - Method in class eu.etaxonomy.cdm.model.agent.ORCID
 
ATHAPASCANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ATLANTICOCEAN() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
atomisedIdentificationList - Variable in class eu.etaxonomy.cdm.io.specimen.SpecimenDataHolder
 
atomisedIdentificationList - Variable in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXDataHolder
 
atomisedStr - Variable in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXDataHolder
 
attachFigure(MarkupImportState, XMLEvent, AnnotatableEntity, Media) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
attachFootnote(MarkupImportState, AnnotatableEntity, FootnoteDataHolder) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
ATTRIBUTE_DATASOURCE_NAME - Static variable in class eu.etaxonomy.cdm.opt.config.DataSourceConfigurer
Attribute to configure the name of the data source as set as bean name in the datasources.xml.
ATTRIBUTE_FORCE_SCHEMA_UPDATE - Static variable in class eu.etaxonomy.cdm.opt.config.DataSourceConfigurer
Force a schema update when the cdmlib-remote-webapp instance is starting up see also eu.etaxonomy.cdm.server.instance.SharedAttributes.ATTRIBUTE_FORCE_SCHEMA_UPDATE
ATTRIBUTE_JDBC_JNDI_NAME - Static variable in class eu.etaxonomy.cdm.opt.config.DataSourceConfigurer
see also eu.etaxonomy.cdm.server.instance.SharedAttributes
AudioFile - Class in eu.etaxonomy.cdm.model.media
 
AudioFile() - Constructor for class eu.etaxonomy.cdm.model.media.AudioFile
 
AudioFile(URI, Integer) - Constructor for class eu.etaxonomy.cdm.model.media.AudioFile
 
AudioInfo - Class in eu.etaxonomy.cdm.common.media
 
AudioInfo() - Constructor for class eu.etaxonomy.cdm.common.media.AudioInfo
 
AuditedSchemaUpdaterStepBase - Class in eu.etaxonomy.cdm.database.update
Base class for a schema update step which supports automated handling of auditing tables.
AuditedSchemaUpdaterStepBase(List<ISchemaUpdaterStep>, String, boolean) - Constructor for class eu.etaxonomy.cdm.database.update.AuditedSchemaUpdaterStepBase
 
AuditedSchemaUpdaterStepBase(List<? extends ISchemaUpdaterStep>, String, String, boolean) - Constructor for class eu.etaxonomy.cdm.database.update.AuditedSchemaUpdaterStepBase
 
AuditEvent - Class in eu.etaxonomy.cdm.model.view
 
AuditEvent() - Constructor for class eu.etaxonomy.cdm.model.view.AuditEvent
 
AuditEventContext - Interface in eu.etaxonomy.cdm.model.view.context
 
AuditEventContextHolder - Class in eu.etaxonomy.cdm.model.view.context
Class based heavily on SecurityContextHolder, part of spring-security, but instead binding an AuditEvent object to the context.
AuditEventContextHolder() - Constructor for class eu.etaxonomy.cdm.model.view.context.AuditEventContextHolder
 
AuditEventContextHolderStrategy - Interface in eu.etaxonomy.cdm.model.view.context
Class based heavily on SecurityContextHolderStrategy, part of spring-security, but instead binding a View object to the context.
AuditEventContextImpl - Class in eu.etaxonomy.cdm.model.view.context
Class based heavily on SecurityContextImpl, part of spring-security, but instead binding a View object to the context.
AuditEventContextImpl() - Constructor for class eu.etaxonomy.cdm.model.view.context.AuditEventContextImpl
 
AuditEventDao - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.view
 
AuditEventDao() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.view.AuditEventDao
 
AuditEventRecord<T extends CdmBase> - Interface in eu.etaxonomy.cdm.model.view
 
AuditEventRecordImpl<T extends CdmBase> - Class in eu.etaxonomy.cdm.model.view
 
AuditEventRecordImpl(Object[]) - Constructor for class eu.etaxonomy.cdm.model.view.AuditEventRecordImpl
 
AuditEventService - Class in eu.etaxonomy.cdm.api.service
 
AuditEventService() - Constructor for class eu.etaxonomy.cdm.api.service.AuditEventService
 
auditEventService - Variable in class eu.etaxonomy.cdm.remote.controller.oaipmh.AbstractOaiPmhController
 
AuditEventSort - Enum in eu.etaxonomy.cdm.persistence.dao.common
 
AUSTRALASIA() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
AUSTRALIACOMMONWEALTHOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
AUSTRALIANS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AUSTRIAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
AUSTRONESIAN_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
authenticate(String, String) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
authenticate(String, String) - Method in class eu.etaxonomy.cdm.api.application.CdmRepository
 
authenticate(String, String) - Method in interface eu.etaxonomy.cdm.api.application.ICdmRepository
 
authenticate(IImportConfigurator) - Method in class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport
 
authenticateAsDefaultAdmin() - Method in interface eu.etaxonomy.cdm.io.common.IIoConfigurator
Creates the UsernamePasswordAuthenticationToken for the default admin.
authenticateAsDefaultAdmin() - Method in class eu.etaxonomy.cdm.io.common.IoConfiguratorBase
 
authenticationToken - Variable in class eu.etaxonomy.cdm.io.common.IoConfiguratorBase
 
AUTHOR - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
author(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses an author (person or team) string and returns the Person or Team.
author - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AUTHOR_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
AUTHOR_FAMILY_NAME - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_FK - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_GIVEN_NAME - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_ID - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_PREFIX - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_SERVICE_URL - Static variable in interface eu.etaxonomy.cdm.ext.ipni.IIpniService
 
AUTHOR_SUFFIX - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_TEAM_FK - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_TEAM_SEQ_NUMBER - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_TEAM_STRING - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
AUTHOR_TITLE - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
authorAndExTeam - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
authorFirstName - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
authorities - Variable in class eu.etaxonomy.cdm.model.permission.User
 
AUTHORITY_ID_PREFIX - Static variable in class eu.etaxonomy.cdm.model.common.LSIDAuthority
 
AuthorityBase - Class in eu.etaxonomy.cdm.model.permission
Base class for persistable authorities.
AuthorityBase() - Constructor for class eu.etaxonomy.cdm.model.permission.AuthorityBase
 
AuthorityController - Class in eu.etaxonomy.cdm.remote.service
Controller which accepts incoming requests to the LSIDAuthorityService This controller has three methods.
AuthorityController() - Constructor for class eu.etaxonomy.cdm.remote.service.AuthorityController
 
AuthorityType - Enum in eu.etaxonomy.cdm.model.common
The type of authority for an externally loaded entity.
AuthorizationServerConfiguration() - Constructor for class eu.etaxonomy.cdm.remote.config.OAuth2ServerConfiguration.AuthorizationServerConfiguration
 
authorLastName - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
authorName - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
authorNameCorporation - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
authorPart - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
authorPrefix - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AUTHORS - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
AUTHORS_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
AUTHORS_ROLE - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
authorsAndEx(String, TeamOrPersonBase<?>[], Integer[]) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses the author and ex-author String
authorSeparatorMaxPosition - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AUTHORSHIP_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
AUTHORSHIP_TITLE - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
authorTeam - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AUTOMATIC() - Static method in class eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus
Returns the "automatic" name type designation status.
If a new name has to be established for a genus name this new name automatically gets the same type species as the old name.
autonym - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
autonym2 - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
autonymPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
AutoPropertyInitializer<T extends CdmBase> - Class in eu.etaxonomy.cdm.persistence.dao.initializer
 
AutoPropertyInitializer() - Constructor for class eu.etaxonomy.cdm.persistence.dao.initializer.AutoPropertyInitializer
 
AVARIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AVERAGE() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
AVESTAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AWADHI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AYMARA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AZERBAIJANI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
AZERBAIJANREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 

B

BadResumptionTokenException - Exception in eu.etaxonomy.cdm.remote.controller
 
BadResumptionTokenException() - Constructor for exception eu.etaxonomy.cdm.remote.controller.BadResumptionTokenException
 
BAHAMASCOMMONWEALTHOFTHE() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BAHRAINKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BALINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BALTIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BALUCHI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BAMBARA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BAMILEKES() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BANDAS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BANGLADESHPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BANTU_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BARBADOS() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BARCODE - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
BAS_AUTHORTEAM_FK - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
BAS_EX_AUTHORTEAM_FK - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
BASA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BASE_PATH - Static variable in class eu.etaxonomy.cdm.remote.staticSwagger.StaticSwaggerApiDoc
 
BASE_PATH_REGEX - Static variable in class eu.etaxonomy.cdm.remote.staticSwagger.StaticSwaggerApiDoc
 
BASE_URI - Static variable in class eu.etaxonomy.cdm.io.descriptive.owl.OwlUtil
 
BASE_URL - Static variable in class eu.etaxonomy.cdm.ext.occurrence.gbif.GbifQueryServiceWrapper
 
baseClass - Variable in class eu.etaxonomy.cdm.remote.controller.BaseController
 
BaseController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
based on org.cateproject.controller.common
BaseController() - Constructor for class eu.etaxonomy.cdm.remote.controller.BaseController
 
baseEntity(TypeDesignationBase<?>) - Method in class eu.etaxonomy.cdm.api.service.name.TypeDesignationSetManager
 
BaseListController<T extends CdmBase,SERVICE extends IService<T>> - Class in eu.etaxonomy.cdm.remote.controller
 
BaseListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.BaseListController
 
basEnd - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BaseThing - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
BaseThing() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.BaseThing
 
BaseThing.PublishedInCitation - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
baseTypeFor(Class<? extends CdmBase>) - Static method in enum eu.etaxonomy.cdm.model.CdmBaseType
 
baseUnit() - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
 
baseUrl - Static variable in class eu.etaxonomy.cdm.remote.controller.ext.ExternalBhleController
 
baseURL - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
BaseView - Class in eu.etaxonomy.cdm.remote.view
 
BaseView() - Constructor for class eu.etaxonomy.cdm.remote.view.BaseView
 
BASHKIR() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BASIONYM - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
BASIONYM() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "basionym" name relationship type.
BASIONYM_AUTHOR - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
BASIONYM_AUTHOR_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
BASIONYM_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
basionymAuthor - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
basionymAuthorCombinationAuthorSeperator - Variable in class eu.etaxonomy.cdm.strategy.cache.name.TaxonNameDefaultCacheStrategy
 
basionymEnd - Variable in class eu.etaxonomy.cdm.strategy.cache.name.TaxonNameDefaultCacheStrategy
 
basionymPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BasionymRelationCreator - Class in eu.etaxonomy.cdm.strategy.homotypicgroup
This class tries to guess all basionym relationships for the synonyms of a given taxon by evaluating the name parts including authors.
BasionymRelationCreator() - Constructor for class eu.etaxonomy.cdm.strategy.homotypicgroup.BasionymRelationCreator
 
BasionymsMustShareEpithetsAndAuthors - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
BasionymsMustShareEpithetsAndAuthorsValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
BasionymsMustShareEpithetsAndAuthorsValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.BasionymsMustShareEpithetsAndAuthorsValidator
 
basionymStart - Variable in class eu.etaxonomy.cdm.strategy.cache.name.TaxonNameDefaultCacheStrategy
 
BASIS_OF_RECORD - Static variable in class eu.etaxonomy.cdm.ext.occurrence.gbif.GbifJsonOccurrenceParser
 
basisOfRecord - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
basisOfRecord - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
BASQUE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
basStart - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BATAKS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BatchValidator - Class in eu.etaxonomy.cdm.api.validation.batch
 
BatchValidator() - Constructor for class eu.etaxonomy.cdm.api.validation.batch.BatchValidator
 
BciSchemaAdapter - Class in eu.etaxonomy.cdm.ext.bci
 
BciSchemaAdapter() - Constructor for class eu.etaxonomy.cdm.ext.bci.BciSchemaAdapter
 
BciServiceWrapper - Class in eu.etaxonomy.cdm.ext.bci
This service allows to query the Biodiversity collection index http://www.biodiversitycollectionsindex.org
BciServiceWrapper() - Constructor for class eu.etaxonomy.cdm.ext.bci.BciServiceWrapper
 
beanInitializer - Variable in class eu.etaxonomy.cdm.persistence.dao.initializer.AutoPropertyInitializer
 
BeanInitNode - Class in eu.etaxonomy.cdm.persistence.dao.initializer
 
BeanInitNode(BeanInitNode, String) - Constructor for class eu.etaxonomy.cdm.persistence.dao.initializer.BeanInitNode
 
bed - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
beforeClass() - Static method in class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest
 
beforeExecute(Thread, Runnable) - Method in class eu.etaxonomy.cdm.persistence.validation.ValidationExecutor
 
beforeFirst() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
beforeMarshal(Object) - Method in class eu.etaxonomy.cdm.io.jaxb.CdmMarshallerListener
 
beginTask(String, int) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor
 
beginTask(String, int) - Method in interface eu.etaxonomy.cdm.common.monitor.IProgressMonitor
Notifies that the main task is beginning.
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.NullProgressMonitor
 
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.ProgressMonitorWrapper
This implementation of a IProgressMonitor method forwards to the wrapped progress monitor.
beginTask(String, int) - Method in class eu.etaxonomy.cdm.common.monitor.SubProgressMonitor
 
behavior - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
BEJA_BEDAWIYET() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BELARUS() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BELGIUMKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BELIZE() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BELORUSSIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BEMBA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BENGALI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BENINPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BERBER_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BerlinModelTransformer - Class in eu.etaxonomy.cdm.io.berlinModel
 
BerlinModelTransformer() - Constructor for class eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer
 
BERMUDA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
bhlPageURI - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
bhlTitleURI - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
BHOJPURI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BHUTANKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BIBLIO_SHORT_CITATION - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
BIBLIOGRAPHIC_CITATION - Static variable in class eu.etaxonomy.cdm.ext.occurrence.gbif.GbifJsonOccurrenceParser
 
bibliographicCitation - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
bibliographicCitation - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
BIBLIOGRAPHY - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
BigDecimalUserType - Class in eu.etaxonomy.cdm.hibernate
This software is public domain and carries NO WARRANTY.
BigDecimalUserType() - Constructor for class eu.etaxonomy.cdm.hibernate.BigDecimalUserType
 
BIHARI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BIKOL() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
bind() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
This method has to be called when starting a new unit-of-work.
bind() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolderMock
This method has to be called when starting a new unit-of-work.
bind(String, Object) - Method in class eu.etaxonomy.cdm.io.jaxb.CdmIDResolver
 
BINI_EDO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BioCaseQueryGenerator - Class in eu.etaxonomy.cdm.ext.occurrence.bioCase
Generates an XML query according to the BioCASe protocol.
BioCaseQueryGenerator() - Constructor for class eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseQueryGenerator
 
BioCaseQueryServiceWrapper - Class in eu.etaxonomy.cdm.ext.occurrence.bioCase
This service provides access to BioCASe providers.
It sends a OccurenceQuery via HTTP POST to a given provider
BioCaseQueryServiceWrapper() - Constructor for class eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseQueryServiceWrapper
 
BioCaseResponse - Class in eu.etaxonomy.cdm.ext.occurrence.bioCase
Wrapper class which holds a DerivedUnitFacade which was parsed from a GBIF JSON response.
BioCaseResponse(Object, URI, String[]) - Constructor for class eu.etaxonomy.cdm.ext.occurrence.bioCase.BioCaseResponse
 
BIOGRAPHIES - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
BIOLOGY_ECOLOGY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "biology_ecology" feature.
BIOVARIETY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
BISLAMA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BLACKSEA() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
BLIN_BILIN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BLIS_SYMBOLS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BLOCKING_NAME_FOR() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "blocking name" name relationship type.
BLOCKING_REGISTRATION_INIT_STRATEGY - Static variable in class eu.etaxonomy.cdm.api.service.registration.RegistrationWorkingSetService
 
BOLD - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
BOLIVIAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
bookTitle - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
BOSNIAANDHERZEGOVINA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BOSNIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
botanicBasionymAuthor - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
botanicBasionymPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BOTSWANAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BOUVETISLAND() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BPH_NUMBER - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
BR - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
bracketVolume - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
BRAJ() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BRAZILFEDERATIVEREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BRETON() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BRITISHINDIANOCEANTERRITORY() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BRITISHVIRGINISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BRUNEIDARUSSALAM() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BUGINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
build(CategoricalData, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.AbstractCategoricalDescriptionBuilder
 
build(QuantitativeData, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.AbstractQuantitativeDescriptionBuilder
 
build(T, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.DescriptionBuilder
Returns the TextData element with the description of the according DescriptionElement
buildAgents(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Agents associated with the Dataset
buildBranches(TermNode<Feature>, ElementImpl, boolean) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildCategorical(ElementImpl, CategoricalData) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Categorical associated with a SummaryData
buildCharacters(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Characters associated with the Dataset
buildCharacterTrees(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildClassifications(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildCodedDescriptions(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildConfiguration(String) - Static method in class eu.etaxonomy.cdm.cache.CdmModelCacher
 
buildContent(ElementImpl, LanguageString) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Content associated with a TextChar
buildDataset(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildDateModified(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds ModifiedDate associated with RevisionData
buildDescriptiveConcepts(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildDocument() - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds the whole document.
builder - Variable in class eu.etaxonomy.cdm.print.XmlEntityFactoryBase
The SAXBuilder used to parse the results from cdmlib-remote API calls
buildFeature(Feature, boolean) - Method in class eu.etaxonomy.cdm.api.service.MicroFormatCategoricalDescriptionBuilder
 
buildFeature(Feature, boolean) - Method in class eu.etaxonomy.cdm.api.service.MicroFormatQuantitativeDescriptionBuilder
 
buildGeographicAreas(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildIPRStatements(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds IPRStatements associated with the Dataset
buildLabel(ElementImpl, String) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Creates a Label element
buildList(String) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
Builds a list of strings by splitting an input string with delimiters whitespace, comma, or semicolon
buildMeasure(ElementImpl, StatisticalMeasurementValue) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Measure associated with a Quantitative
buildMediaObjects(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildPublications(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildQuantitative(ElementImpl, QuantitativeData) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Quantitative associated with a SummaryData
buildRdf(Map) - Method in class eu.etaxonomy.cdm.remote.view.RdfView
 
buildRefAgent(ElementImpl, TeamOrPersonBase, String) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds an element Agent referring to Agent defined later in the SDD file
buildReference(VersionableEntity, Map, String, ElementImpl, String, int) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildRepresentation(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds a Representation element using a Reference
buildRepresentation(ElementImpl, TermBase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds a Representation element using a Feature
buildRepresentation(ElementImpl, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds a Representation element using an IdentifiableEntity
buildRevisionData(ElementImpl, IDatabase) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds RevisionData associated with the Dataset
buildScope(ElementImpl, TaxonDescription) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds Scope associated with a CodedDescription
buildSpatialQueryByRange(Rectangle, String) - Static method in class eu.etaxonomy.cdm.api.service.search.QueryFactory
Returns a Lucene Query which rely on double numeric range query on Latitude / Longitude (+/- copied from SpatialQueryBuilderFromPoint#buildSpatialQueryByRange(Point, double, String))
buildSpecimens(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
 
buildState(ElementImpl, State) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds State associated with a Categorical
buildStatusColorMap(String, ITermService, IVocabularyService) - Static method in class eu.etaxonomy.cdm.ext.geo.EditGeoServiceUtilities
 
buildString() - Method in class eu.etaxonomy.cdm.api.service.name.TypeDesignationSetManager
 
buildStringWithCitation() - Method in class eu.etaxonomy.cdm.api.service.name.TypeDesignationSetManager
 
buildSummaryData(ElementImpl, TaxonDescription) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds SummaryData associated with a CodedDescription
buildTaxon() - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXTreatmentExtractor.MyName
 
buildTaxonNames(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds TaxonNames associated with the Dataset
buildTechnicalMetadata(ElementImpl) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds TechnicalMetadata associated with the SDD file
buildTermTypeFilterRestrictions(TermType) - Method in interface eu.etaxonomy.cdm.api.service.ITermTreeService
 
buildTermTypeFilterRestrictions(TermType) - Method in class eu.etaxonomy.cdm.api.service.TermTreeServiceImpl
 
buildTextChar(ElementImpl, TextData) - Method in class eu.etaxonomy.cdm.io.sdd.out.SDDDocumentBuilder
Builds TextChar associated with a SummaryData
buildTextDataFeature(Feature, List<Language>) - Method in class eu.etaxonomy.cdm.api.service.DescriptionBuilder
Returns a TextData with the name of the feature.
builReference(String, String, NomenclaturalCode, Taxon, Reference) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor.ReferenceBuilder
 
BULGARIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BULGARIAPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BURIAT() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BURKINAFASO() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BURMESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
BURUNDIREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
BY_ORDER_INDEX - Static variable in class eu.etaxonomy.cdm.persistence.query.OrderHint
 
BY_ORDER_INDEX_DESC - Static variable in class eu.etaxonomy.cdm.persistence.query.OrderHint
 
BY_TREE_INDEX - Static variable in class eu.etaxonomy.cdm.persistence.query.OrderHint
 
BY_TREE_INDEX_DESC - Static variable in class eu.etaxonomy.cdm.persistence.query.OrderHint
 
byAreas() - Static method in enum eu.etaxonomy.cdm.api.service.description.AggregationMode
 
byAreasAndRanks() - Static method in enum eu.etaxonomy.cdm.api.service.description.AggregationMode
 
byConnectionString(String) - Static method in enum eu.etaxonomy.cdm.database.DatabaseTypeEnum
Returns the database type evaluating the connection string.
byDatabaseMetaData(DatabaseMetaData) - Static method in enum eu.etaxonomy.cdm.database.DatabaseTypeEnum
 
byDriverClass(String) - Static method in enum eu.etaxonomy.cdm.database.DatabaseTypeEnum
Returns the DatabaseTypeEnum to a given DriverClass
byGroupName(String) - Static method in enum eu.etaxonomy.cdm.remote.config.SwaggerGroupsConfig
 
byKey(String) - Static method in enum eu.etaxonomy.cdm.model.metadata.NamedAreaSearchField
 
byKey(String) - Static method in enum eu.etaxonomy.cdm.model.metadata.TermComboEnum
 
byKey(String) - Static method in enum eu.etaxonomy.cdm.model.metadata.TermDisplayEnum
 
byKey(Class<R>, String) - Static method in class eu.etaxonomy.cdm.model.term.EnumeratedTermVoc
 
byRanks() - Static method in enum eu.etaxonomy.cdm.api.service.description.AggregationMode
 
bySpec(String) - Static method in enum eu.etaxonomy.cdm.remote.dto.oaipmh.SetSpec
 
byUuid(Class<R>, UUID) - Static method in class eu.etaxonomy.cdm.model.term.EnumeratedTermVoc
 

C

cache(CdmBase) - Method in class eu.etaxonomy.cdm.io.cdm2cdm.Cdm2CdmImportBase
 
CACHE_PROVIDER_CLASS - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.HibernateConfiguration
 
CACHE_PROVIDER_DEFAULT - Static variable in class eu.etaxonomy.cdm.persistence.hibernate.HibernateConfiguration
 
cacheGetterFields(Cache) - Method in class eu.etaxonomy.cdm.cache.CdmModelCacher
 
CacheLoader - Class in eu.etaxonomy.cdm.cache
 
CacheLoader(ICdmCacher) - Constructor for class eu.etaxonomy.cdm.cache.CacheLoader
 
cacheManager - Variable in class eu.etaxonomy.cdm.api.cache.CdmCacher
 
cacheManager() - Method in class eu.etaxonomy.cdm.api.config.EhCacheConfiguration
 
CacheMatcher - Class in eu.etaxonomy.cdm.strategy.match
 
cacheStrategy - Variable in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
CacheStrategyGenerator - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CacheStrategyGenerator() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CacheStrategyGenerator
 
CacheUpdate - Annotation Type in eu.etaxonomy.cdm.strategy.cache.name
 
CacheUpdater - Class in eu.etaxonomy.cdm.api.service.util
 
CacheUpdater() - Constructor for class eu.etaxonomy.cdm.api.service.util.CacheUpdater
 
CacheUpdaterConfigurator - Class in eu.etaxonomy.cdm.api.service.config
 
CacheUpdaterWithNewCacheStrategy - Class in eu.etaxonomy.cdm.api.service.util
 
CacheUpdaterWithNewCacheStrategy() - Constructor for class eu.etaxonomy.cdm.api.service.util.CacheUpdaterWithNewCacheStrategy
 
CADDO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
calculateNumberOfNodes() - Method in class eu.etaxonomy.cdm.print.PublishConfigurator
FIXME this is a dummy implementation
CalendarJSONValueProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.value
 
CalendarJSONValueProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.value.CalendarJSONValueProcessor
 
calendarToPartial(Calendar) - Static method in class eu.etaxonomy.cdm.model.common.TimePeriod
Transforms a Calendar into a Partial
CAMBODIAKINGDOMOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CAMEROONUNITEDREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CANADA() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
canBeLat - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
cancel(UUID) - Method in interface eu.etaxonomy.cdm.api.service.IProgressMonitorService
Sets the cancel flag to true for the monitor corresponding to the given uuid
cancel(UUID) - Method in class eu.etaxonomy.cdm.api.service.ProgressMonitorServiceImpl
 
cancelRowUpdates() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
CANDIDATE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
CannotDisseminateFormatException - Exception in eu.etaxonomy.cdm.remote.exception
 
CannotDisseminateFormatException(String) - Constructor for exception eu.etaxonomy.cdm.remote.exception.CannotDisseminateFormatException
 
CAPEVERDEREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
capital2charDotWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
capital2LetterWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
capitalDotWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
capitalEpiWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
capitalWord - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
CardinalityPropertyFilter - Class in eu.etaxonomy.cdm.remote.json.util
 
CardinalityPropertyFilter() - Constructor for class eu.etaxonomy.cdm.remote.json.util.CardinalityPropertyFilter
 
caseInsensitive - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.CustomPatternIn
 
CaseType - Enum in eu.etaxonomy.cdm.database.update
Tables may be stored in different cases: CamelCase (preferred), upper case (capital), or lower case, depending on the database preferences.
caseTypeOfDatasource(ICdmDataSource) - Static method in enum eu.etaxonomy.cdm.database.update.CaseType
Defines the CaseType (camel, upper, lower) of a datasource depending on the case used for the CdmMetaData table.
CASPIANSEA() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
 
castAndDeproxy(ITaxonNameBase) - Static method in class eu.etaxonomy.cdm.model.name.TaxonName
Method to cast a interfaced name to a concrete name.
castAndDeproxy(Set<ITaxonNameBase>) - Static method in class eu.etaxonomy.cdm.model.name.TaxonName
Method to cast a set of interfaced names to concrete namex.
castReferenceToArticle() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToBook() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToBookSection() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToCdDvd() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToDatabase() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToGeneric() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToInProceedings() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToJournal() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToMap() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToPatent() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToPersonalCommunication() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToPrintSeries() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToProceedings() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToReport() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToThesis() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
castReferenceToWebPage() - Method in class eu.etaxonomy.cdm.model.reference.Reference
 
CASUAL() - Static method in class eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm
Casual alien or introduced: adventive (casual)
CASUAL_PRESENCE_QUESTIONABLE() - Static method in class eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm
Casual alien, presence questionable
CASUAL_REPORTED_IN_ERROR() - Static method in class eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm
Casual alien, reported in error
CATALAN_VALENCIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
catalogNumber - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
catalogNumber - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CATALOGUE_NUMBER - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
CategoricalData - Class in eu.etaxonomy.cdm.model.description
This class represents information pieces expressed in categorical type of data (in opposition to quantitative data on one side and to literal data on the other side).
CategoricalData() - Constructor for class eu.etaxonomy.cdm.model.description.CategoricalData
Class constructor: creates a new empty categorical data instance.
CategoricalData(List<State>, Feature) - Constructor for class eu.etaxonomy.cdm.model.description.CategoricalData
Class constructor: creates a new empty categorical data instance.
CategoricalDataFormatter - Class in eu.etaxonomy.cdm.format.description
Formatter for CategoricalData.
CategoricalDataFormatter(Object, ICdmFormatter.FormatKey[]) - Constructor for class eu.etaxonomy.cdm.format.description.CategoricalDataFormatter
 
CAUCASIAN_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CAYMANISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
Cdm2CdmDescriptionImport - Class in eu.etaxonomy.cdm.io.cdm2cdm
 
Cdm2CdmDescriptionImport() - Constructor for class eu.etaxonomy.cdm.io.cdm2cdm.Cdm2CdmDescriptionImport
 
Cdm2CdmImportBase - Class in eu.etaxonomy.cdm.io.cdm2cdm
Base class for migrating data from one CDM instance to another.
Cdm2CdmImportBase() - Constructor for class eu.etaxonomy.cdm.io.cdm2cdm.Cdm2CdmImportBase
 
Cdm2CdmImportConfigurator - Class in eu.etaxonomy.cdm.io.cdm2cdm
Configuration base class for Cdm2Cdm migration.
Cdm2CdmImportConfigurator(ICdmDataSource, ICdmDataSource) - Constructor for class eu.etaxonomy.cdm.io.cdm2cdm.Cdm2CdmImportConfigurator
 
Cdm2CdmImportState - Class in eu.etaxonomy.cdm.io.cdm2cdm
Import state base class for migrating data from one CDM instance to another.
Cdm2CdmImportState(Cdm2CdmImportConfigurator) - Constructor for class eu.etaxonomy.cdm.io.cdm2cdm.Cdm2CdmImportState
 
Cdm2CdmTaxonNodeImport - Class in eu.etaxonomy.cdm.io.cdm2cdm
 
Cdm2CdmTaxonNodeImport() - Constructor for class eu.etaxonomy.cdm.io.cdm2cdm.Cdm2CdmTaxonNodeImport
 
Cdm2MediawikiExporter - Class in eu.etaxonomy.cdm.print.out.mediawiki
fill in all parameters and you get a complete export from a cdm database to a mediawiki TODO would we move this class somewhere else and/or rename it?
Cdm2MediawikiExporter() - Constructor for class eu.etaxonomy.cdm.print.out.mediawiki.Cdm2MediawikiExporter
 
CDM_BEAN_DEFINITION_FILE - Static variable in class eu.etaxonomy.cdm.opt.config.DataSourceConfigurer
 
CDM_CONFIGFILE_OVERRIDE - Static variable in class eu.etaxonomy.cdm.config.ConfigFileUtil
 
CDM_DATA_SOURCE_ID - Static variable in class eu.etaxonomy.cdm.api.config.CdmConfigurationKeys
key for the spring environment to the datasource bean id aka instance name
CDM_DATA_SOURCE_ID - Static variable in class eu.etaxonomy.cdm.opt.config.DataSourceConfigurer
Deprecated.
use CdmConfigurationKeys.CDM_DATA_SOURCE_ID instead
CDM_MAP_SER_FILE - Static variable in class eu.etaxonomy.cdm.cache.CdmModelCacher
 
CDM_MAP_SER_FILE_PATH - Static variable in class eu.etaxonomy.cdm.cache.CdmModelCacher
 
CDM_MAP_SER_FOLDER - Static variable in class eu.etaxonomy.cdm.cache.CdmModelCacher
 
CDM_MODEL_CACHE_NAME - Static variable in class eu.etaxonomy.cdm.cache.CdmRemoteCacheManager
 
CDM_NAMEINFORMATION_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.TDWGNamespacePrefixMapper
 
CDM_NAMESPACE - Static variable in class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
CDM_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
CDM_PREF_KEY_SEC_REF_UUID - Static variable in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxonGraph.TaxonGraphDaoHibernateImpl
 
CDM_SCHEMA_FILES - Static variable in class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
CDM_UUID_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase
 
CdmAccessor<BeanT,ValueT> - Class in eu.etaxonomy.cdm.jaxb
 
CdmAccessor(Accessor<BeanT, ValueT>) - Constructor for class eu.etaxonomy.cdm.jaxb.CdmAccessor
 
CdmAccessorFactoryImpl - Class in eu.etaxonomy.cdm.jaxb
 
CdmAccessorFactoryImpl() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmAccessorFactoryImpl
 
CdmAccessorFactoryImpl(AccessorFactory) - Constructor for class eu.etaxonomy.cdm.jaxb.CdmAccessorFactoryImpl
 
cdmApp - Variable in class eu.etaxonomy.cdm.io.common.CdmDefaultIOBase
 
cdmApp - Variable in class eu.etaxonomy.cdm.io.common.IoConfiguratorBase
 
CdmApplicationAwareDefaultExport<T extends IExportConfigurator> - Class in eu.etaxonomy.cdm.io.common
This class is an default exporter class that is a spring bean and therefore it knows all other IO classes that are beans
CdmApplicationAwareDefaultExport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultExport
 
CdmApplicationAwareDefaultImport<T extends IImportConfigurator> - Class in eu.etaxonomy.cdm.io.common
 
CdmApplicationAwareDefaultImport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmApplicationAwareDefaultImport
 
CdmApplicationController - Class in eu.etaxonomy.cdm.api.application
 
CdmApplicationController() - Constructor for class eu.etaxonomy.cdm.api.application.CdmApplicationController
FIXME:Remoting this constructor is added only to allow extension of this cntroller class.
CdmApplicationController(Resource, ICdmDataSource, DbSchemaValidation, HibernateConfiguration, boolean, IProgressMonitor, List<ApplicationListener>) - Constructor for class eu.etaxonomy.cdm.api.application.CdmApplicationController
Constructor, opens an spring 2.5 ApplicationContext by using the according data source
CdmApplicationUtils - Class in eu.etaxonomy.cdm.api.application
 
CdmApplicationUtils() - Constructor for class eu.etaxonomy.cdm.api.application.CdmApplicationUtils
 
CdmAssignableTypeFilter - Class in eu.etaxonomy.cdm.model
Special implementation for the cdm which allows to also match abstract base types and interfaces in eu.etaxonomy.cdm.model.
CdmAssignableTypeFilter(Class, boolean, boolean) - Constructor for class eu.etaxonomy.cdm.model.CdmAssignableTypeFilter
 
CdmAttributeMapperBase - Class in eu.etaxonomy.cdm.io.common.mapping
A mapper base class for all mappers mapping source attributes to destination attributes.
CdmAttributeMapperBase() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmAttributeMapperBase
 
CdmAuthority - Class in eu.etaxonomy.cdm.model.permission
CDM authority class.
CdmAuthority - Class in eu.etaxonomy.cdm.persistence.hibernate.permission
A CdmAuthority consists basically of two parts which are separated by a dot character '.'.
CdmAuthority(CdmBase, EnumSet<CRUD>) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthority(CdmBase, String, EnumSet<CRUD>) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthority(Class<? extends CdmBase>, String, EnumSet<CRUD>, UUID) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthority(PermissionClass, String, EnumSet<CRUD>, UUID) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthority(PermissionClass, EnumSet<CRUD>) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthority(String) - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthority
 
CdmAuthorityDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.permission
 
CdmAuthorityDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.permission.CdmAuthorityDaoImpl
 
CdmAuthorityParsingException - Exception in eu.etaxonomy.cdm.persistence.hibernate.permission
 
CdmAuthorityParsingException(String) - Constructor for exception eu.etaxonomy.cdm.persistence.hibernate.permission.CdmAuthorityParsingException
 
CdmBase - Class in eu.etaxonomy.cdm.model.common
The base class for all CDM domain classes implementing UUIDs and bean property change event firing.
CdmBase() - Constructor for class eu.etaxonomy.cdm.model.common.CdmBase
Class constructor assigning a unique UUID and creation date.
CdmBaseType - Enum in eu.etaxonomy.cdm.model
Enumeration of all abstract CDM base types.
CdmBeanProcessingRegistry - Class in eu.etaxonomy.cdm.remote.json.processor
Deprecated.
class is not beeing used but kept as reference
CdmBeanProcessingRegistry() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.CdmBeanProcessingRegistry
Deprecated.
 
CdmBooleanMapper - Class in eu.etaxonomy.cdm.io.common.mapping.berlinModel
 
CdmBooleanMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.berlinModel.CdmBooleanMapper
 
CdmCacher - Class in eu.etaxonomy.cdm.api.cache
CDM Entity Cacher class based on EhCache using UUID as key.
CdmCacher() - Constructor for class eu.etaxonomy.cdm.api.cache.CdmCacher
Constructor which initialises a singleton CacheManager
cdmCacher - Variable in class eu.etaxonomy.cdm.cache.CacheLoader
 
CdmCdmTermImport - Class in eu.etaxonomy.cdm.io.cdm2cdm
 
CdmCdmTermImport() - Constructor for class eu.etaxonomy.cdm.io.cdm2cdm.CdmCdmTermImport
 
CdmClientCacheException - Exception in eu.etaxonomy.cdm.cache
 
CdmClientCacheException(String) - Constructor for exception eu.etaxonomy.cdm.cache.CdmClientCacheException
 
CdmClientCacheException(Exception) - Constructor for exception eu.etaxonomy.cdm.cache.CdmClientCacheException
 
CdmConfigurationFileNames - Class in eu.etaxonomy.cdm.api.config
 
CdmConfigurationFileNames() - Constructor for class eu.etaxonomy.cdm.api.config.CdmConfigurationFileNames
 
CdmConfigurationKeys - Class in eu.etaxonomy.cdm.api.config
 
CdmConfigurationKeys() - Constructor for class eu.etaxonomy.cdm.api.config.CdmConfigurationKeys
 
CdmDataChangeEvent - Class in eu.etaxonomy.cdm.persistence.hibernate
The CrudEvent unifies all CRUD events into one interface.
CdmDataChangeEvent.EventType - Enum in eu.etaxonomy.cdm.persistence.hibernate
The event types currently implemented
CdmDataChangeMap - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmDataChangeMap() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
CdmDataSource - Class in eu.etaxonomy.cdm.database
 
CdmDataSource(DatabaseTypeEnum, String, String, int, String, String, String, H2Mode) - Constructor for class eu.etaxonomy.cdm.database.CdmDataSource
 
CdmDbExportMapping<STATE extends DbExportStateBase<CONFIG,TRANSFORM>,CONFIG extends DbExportConfiguratorBase<STATE,TRANSFORM,Source>,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
CdmDbExportMapping(String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.out.CdmDbExportMapping
 
CdmDefaultExport<T extends IExportConfigurator> - Class in eu.etaxonomy.cdm.io.common
This is an exporter that invokes the application aware defaultExport when invoked itself
CdmDefaultExport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmDefaultExport
 
CdmDefaultImport<T extends IImportConfigurator> - Class in eu.etaxonomy.cdm.io.common
 
CdmDefaultImport() - Constructor for class eu.etaxonomy.cdm.io.common.CdmDefaultImport
 
CdmDefaultIOBase<T extends IIoConfigurator> - Class in eu.etaxonomy.cdm.io.common
This is an exporter that invokes the application aware defaultExport when invoked itself
CdmDefaultIOBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmDefaultIOBase
 
CdmDefaultValueProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.value
Overrides the default implementation in json-lib to preserve null values of all numbers.
CdmDefaultValueProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.value.CdmDefaultValueProcessor
 
CdmDefaultValueProcessorMatcher - Class in eu.etaxonomy.cdm.remote.json.processor.matcher
 
CdmDefaultValueProcessorMatcher() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.matcher.CdmDefaultValueProcessorMatcher
 
CdmDeleteListener - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmDeleteListener() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmDeleteListener
 
CdmDocumentBuilder - Class in eu.etaxonomy.cdm.io.jaxb
Initializes a JaxbContext with one class (eu.etaxonomy.cdm.model.DataSet).
CdmDocumentBuilder() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
CdmDocumentBuilder(boolean, String) - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
cdmEntity - Variable in class eu.etaxonomy.cdm.api.service.dto.EntityDTOBase
 
CdmEntity(UUID, String, T) - Constructor for class eu.etaxonomy.cdm.api.service.dto.EntityDTOBase.CdmEntity
 
CdmEntity(UUID, Object, String, String) - Constructor for class eu.etaxonomy.cdm.api.service.dto.EntityDTOBase.CdmEntity
 
CdmEntityCacheKey<T extends CdmBase> - Class in eu.etaxonomy.cdm.cache
 
CdmEntityCacheKey(T) - Constructor for class eu.etaxonomy.cdm.cache.CdmEntityCacheKey
 
CdmEntityCacheKey(Class<T>, int) - Constructor for class eu.etaxonomy.cdm.cache.CdmEntityCacheKey
 
CdmEntityDaoBase<T extends CdmBase> - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
CdmEntityDaoBase(Class<T>) - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
CdmEntityIdentifier - Class in eu.etaxonomy.cdm.api.service.dto
 
CdmEntityIdentifier(int, Class<? extends CdmBase>) - Constructor for class eu.etaxonomy.cdm.api.service.dto.CdmEntityIdentifier
 
CdmEntityInfo(Object) - Constructor for class eu.etaxonomy.cdm.cache.EntityCacherDebugResult.CdmEntityInfo
 
CdmExceptionResolver - Class in eu.etaxonomy.cdm.remote.exception
 
CdmExceptionResolver() - Constructor for class eu.etaxonomy.cdm.remote.exception.CdmExceptionResolver
 
CdmExportBase<CONFIG extends ExportConfiguratorBase<STATE,TRANSFORM,DEST>,STATE extends ExportStateBase,TRANSFORM extends IExportTransformer,DEST> - Class in eu.etaxonomy.cdm.io.common
 
CdmExportBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmExportBase
 
CdmFetch - Class in eu.etaxonomy.cdm.persistence.fetch
 
CdmFormatterFactory - Class in eu.etaxonomy.cdm.format
Factory class that instantiates a matching ICdmFormatter for the given object and configures the format according to the given formatKeys.
CdmFormatterFactory() - Constructor for class eu.etaxonomy.cdm.format.CdmFormatterFactory
 
CdmGenericDaoImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
CdmGenericDaoImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl
 
CdmGenericDaoImpl.ReferenceHolder - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
 
CdmHibernateInterceptor - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmHibernateInterceptor() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmHibernateInterceptor
 
CdmHibernateListener - Annotation Type in eu.etaxonomy.cdm.config
 
CdmHibernateListenerConfiguration - Class in eu.etaxonomy.cdm.config
 
CdmHibernateListenerConfiguration() - Constructor for class eu.etaxonomy.cdm.config.CdmHibernateListenerConfiguration
 
CdmIDResolver - Class in eu.etaxonomy.cdm.io.jaxb
 
CdmIDResolver() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmIDResolver
 
CdmImportBase<CONFIG extends IImportConfigurator,STATE extends ImportStateBase> - Class in eu.etaxonomy.cdm.io.common
 
CdmImportBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmImportBase
 
CdmImportBase.TermMatchMode - Enum in eu.etaxonomy.cdm.io.common
 
CdmIntegrationTest - Class in eu.etaxonomy.cdm.test.integration
Abstract base class for integration testing a spring / hibernate application using the unitils testing framework and dbunit.
CdmIntegrationTest() - Constructor for class eu.etaxonomy.cdm.test.integration.CdmIntegrationTest
 
CdmIoApplicationController - Class in eu.etaxonomy.cdm.io.api.application
 
CdmIoApplicationController(Resource, ICdmDataSource, DbSchemaValidation, HibernateConfiguration, boolean, IProgressMonitor) - Constructor for class eu.etaxonomy.cdm.io.api.application.CdmIoApplicationController
Constructor.
CdmIoBase<STATE extends IoStateBase,RESULT extends IoResultBase> - Class in eu.etaxonomy.cdm.io.common
 
CdmIoBase() - Constructor for class eu.etaxonomy.cdm.io.common.CdmIoBase
 
CdmIoMapping - Class in eu.etaxonomy.cdm.io.common.mapping
 
CdmIoMapping() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmIoMapping
 
CdmKey(Class, int) - Constructor for class eu.etaxonomy.cdm.io.stream.mapping.IImportMapping.CdmKey
 
CdmKey(IdentifiableEntity<?>) - Constructor for class eu.etaxonomy.cdm.io.stream.mapping.IImportMapping.CdmKey
 
CdmLightClassificationExport - Class in eu.etaxonomy.cdm.io.cdmLight
 
CdmLightClassificationExport() - Constructor for class eu.etaxonomy.cdm.io.cdmLight.CdmLightClassificationExport
 
CdmLightExportConfigurator - Class in eu.etaxonomy.cdm.io.cdmLight
 
CdmLightExportConfigurator(IExportTransformer) - Constructor for class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportConfigurator
 
CdmLightExportResultProcessor - Class in eu.etaxonomy.cdm.io.cdmLight
 
CdmLightExportResultProcessor(CdmLightExportState) - Constructor for class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportResultProcessor
 
CdmLightExportState - Class in eu.etaxonomy.cdm.io.cdmLight
 
CdmLightExportState(CdmLightExportConfigurator) - Constructor for class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportState
 
CdmLightExportTable - Enum in eu.etaxonomy.cdm.io.cdmLight
An enumeration with each instance representing a table type in the Output Model.
CdmLinkBase - Class in eu.etaxonomy.cdm.model.common
Base class for subclasses linking to other CDM objects.
CdmLinkBase() - Constructor for class eu.etaxonomy.cdm.model.common.CdmLinkBase
 
CdmLinkSource - Class in eu.etaxonomy.cdm.model.reference
Class to link to other CdmBase objects within the context of information sources.
CdmLinkSource() - Constructor for class eu.etaxonomy.cdm.model.reference.CdmLinkSource
 
CdmLinkSource(ICdmTarget) - Constructor for class eu.etaxonomy.cdm.model.reference.CdmLinkSource
 
CdmLinkSourceBeanProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.bean
 
CdmLinkSourceBeanProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.bean.CdmLinkSourceBeanProcessor
 
CdmListenerDuplicationStrategy - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmListenerDuplicationStrategy() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmListenerDuplicationStrategy
 
CdmListenerIntegrator - Class in eu.etaxonomy.cdm.persistence.hibernate
NOTE: This class could be replaced by a HibernateSpringIntegrator as suggested in https://stackoverflow.com/questions/16019820/using-hibernate-4s-integrator-pattern-and-springs-dependency-injection#16045272 this would allow for flexible and extensible configuration via the spring application context.
CdmListenerIntegrator() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmListenerIntegrator
 
CdmMapperBase - Class in eu.etaxonomy.cdm.io.common.mapping
The most general mapper class for all cdm mappers.
CdmMapperBase() - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmMapperBase
 
CdmMarshallerListener - Class in eu.etaxonomy.cdm.io.jaxb
 
CdmMarshallerListener() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmMarshallerListener
 
CdmMassIndexer - Class in eu.etaxonomy.cdm.api.service.search
 
CdmMassIndexer() - Constructor for class eu.etaxonomy.cdm.api.service.search.CdmMassIndexer
 
CdmMetaData - Class in eu.etaxonomy.cdm.model.metadata
 
CdmMetaData() - Constructor for class eu.etaxonomy.cdm.model.metadata.CdmMetaData
Simple constructor to be used by Spring
CdmMetaData(CdmMetaDataPropertyName, String) - Constructor for class eu.etaxonomy.cdm.model.metadata.CdmMetaData
 
CdmMetaData.VersionComparator - Class in eu.etaxonomy.cdm.model.metadata
 
CdmMetaDataPropertyName - Enum in eu.etaxonomy.cdm.model.metadata
 
CdmModelCacher - Class in eu.etaxonomy.cdm.cache
This class is serializing and deserializing the CDM model for performance purposes.
CdmModelCacher() - Constructor for class eu.etaxonomy.cdm.cache.CdmModelCacher
 
CdmModelCacherConnectionProvider - Class in eu.etaxonomy.cdm.cache
This is a very preliminary class to get the model cache running.
CdmModelCacherConnectionProvider() - Constructor for class eu.etaxonomy.cdm.cache.CdmModelCacherConnectionProvider
 
CdmModelFieldPropertyFromClass - Class in eu.etaxonomy.cdm.cache
 
CdmModelFieldPropertyFromClass(String) - Constructor for class eu.etaxonomy.cdm.cache.CdmModelFieldPropertyFromClass
 
CdmNamespacePrefixMapper - Class in eu.etaxonomy.cdm.jaxb
 
CdmNamespacePrefixMapper() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
CdmObjectNonExisting - Exception in eu.etaxonomy.cdm.remote.service
Exception for cases when a CDM object identified by its UUID is not existing or the UUID is malformed and not even a valid UUID
CdmObjectNonExisting(String) - Constructor for exception eu.etaxonomy.cdm.remote.service.CdmObjectNonExisting
 
CdmObjectNonExisting(String, Class) - Constructor for exception eu.etaxonomy.cdm.remote.service.CdmObjectNonExisting
 
CdmOneToManyMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeMapperBase> - Class in eu.etaxonomy.cdm.io.common.mapping.berlinModel
 
CdmOneToManyMapper(Class<ONE>, Class<MANY>, String, SINGLE_MAPPER[]) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.berlinModel.CdmOneToManyMapper
 
CdmOneToManyXmlMapper<ONE extends CdmBase,MANY extends CdmBase,SINGLE_MAPPER extends CdmSingleAttributeXmlMapperBase> - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmOneToManyXmlMapper(Class<ONE>, Class<MANY>, String, SINGLE_MAPPER[]) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmOneToManyXmlMapper
 
CdmPermissionEvaluator - Class in eu.etaxonomy.cdm.persistence.hibernate.permission
 
CdmPermissionEvaluator() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.CdmPermissionEvaluator
 
CdmPermissionVoter - Class in eu.etaxonomy.cdm.persistence.hibernate.permission.voter
The CdmPermissionVoter provides access control votes for CdmBase objects.
CdmPermissionVoter() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.voter.CdmPermissionVoter
 
CdmPermissionVoter.ValidationResult - Class in eu.etaxonomy.cdm.persistence.hibernate.permission.voter
Holds various flags with validation results.
CdmPersistentDataSource - Class in eu.etaxonomy.cdm.database
class to access an CdmDataSource
CdmPersistentSourceUtils - Class in eu.etaxonomy.cdm.config
Utility class which manages the persistent source settings in the datasource datasource config
CdmPersistentSourceUtils() - Constructor for class eu.etaxonomy.cdm.config.CdmPersistentSourceUtils
 
CdmPersistentXMLSource - Class in eu.etaxonomy.cdm.config
Cdm Source class which represents a persisted CDM source object as configured in the CDM sources config file.
CdmPersistentXMLSource.CdmSourceProperties - Enum in eu.etaxonomy.cdm.config
Enumeration containg all possible properties of all types of CDM Sources
CdmPostDataChangeObservableListener - Class in eu.etaxonomy.cdm.persistence.hibernate
ICdmPostDataChangeObserver implementors may register for this listener and their update() will be called after any CRUD (Create, Retrieve, Update, Delete).
CdmPostDataChangeObservableListener() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmPostDataChangeObservableListener
 
CdmPreDataChangeListener - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmPreDataChangeListener() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmPreDataChangeListener
 
CdmPreference - Class in eu.etaxonomy.cdm.model.metadata
This class may hold all preferences data for a CDM database.
CdmPreference(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.metadata.CdmPreference
Constructor.
CdmPreference.PrefKey - Class in eu.etaxonomy.cdm.model.metadata
 
CdmPreferenceLookup - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.common
Caching CdmPreference access class which updates the cached values after the milliseconds as defined in updateInterval (currently 10 minutes).
CdmPreferenceLookup() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmPreferenceLookup
 
CdmProxyBeanProcessorMatcher - Class in eu.etaxonomy.cdm.remote.json.processor.matcher
can handle HibernateProxys
CdmProxyBeanProcessorMatcher() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.matcher.CdmProxyBeanProcessorMatcher
 
CdmRegEx - Class in eu.etaxonomy.cdm.common
 
CdmRegEx() - Constructor for class eu.etaxonomy.cdm.common.CdmRegEx
 
CdmRemoteCacheManager - Class in eu.etaxonomy.cdm.cache
 
CdmRemoteCacheManager.CdmCacheManagerType - Enum in eu.etaxonomy.cdm.cache
 
CdmRemoteConfiguration - Class in eu.etaxonomy.cdm.remote.config
This configuration may completely replace the src/main/resources/eu/etaxonomy/cdm/remote.xml in future
CdmRemoteConfiguration() - Constructor for class eu.etaxonomy.cdm.remote.config.CdmRemoteConfiguration
 
CdmRepository - Class in eu.etaxonomy.cdm.api.application
This class actually is the central access point to all cdm api services and thus to all the entities stored in the cdm.
CdmRepository() - Constructor for class eu.etaxonomy.cdm.api.application.CdmRepository
 
CdmResourceResolver - Class in eu.etaxonomy.cdm.io.jaxb
Copied from CATE (@author ben.clark).
CdmResourceResolver() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmResourceResolver
 
CdmSchemaGenerator - Class in eu.etaxonomy.cdm.io.jaxb
This class is responsible for generating a set of XML schemas for the CDM.
CdmSchemaGenerator() - Constructor for class eu.etaxonomy.cdm.io.jaxb.CdmSchemaGenerator
 
CdmSecurityHibernateInterceptor - Class in eu.etaxonomy.cdm.persistence.hibernate
 
CdmSecurityHibernateInterceptor() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.CdmSecurityHibernateInterceptor
 
CdmSimpleNameTypeFilter - Class in eu.etaxonomy.cdm.model
Special implementation for the cdm which allows to also match cdm types be their simple class name
CdmSimpleNameTypeFilter(String) - Constructor for class eu.etaxonomy.cdm.model.CdmSimpleNameTypeFilter
 
CdmSingleAttributeMapperBase - Class in eu.etaxonomy.cdm.io.common.mapping
Mapper base class mapping a single source attribute to a single destination attribute.
CdmSingleAttributeMapperBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmSingleAttributeMapperBase
 
CdmSingleAttributeMapperBase(String, String, Object) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.CdmSingleAttributeMapperBase
 
CdmSingleAttributeRDFMapperBase - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmSingleAttributeRDFMapperBase(String, String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmSingleAttributeRDFMapperBase
 
CdmSingleAttributeRDFMapperBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmSingleAttributeRDFMapperBase
Uses the Namespace of the parent Element
CdmSingleAttributeXmlMapperBase - Class in eu.etaxonomy.cdm.io.tcsxml
 
CdmSingleAttributeXmlMapperBase(String, Namespace, String) - Constructor for class eu.etaxonomy.cdm.io.tcsxml.CdmSingleAttributeXmlMapperBase
 
CdmSingleAttributeXmlMapperBase(String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsxml.CdmSingleAttributeXmlMapperBase
Uses the Namespace of the parent Element
CdmSource - Class in eu.etaxonomy.cdm.config
Abstract class representing the base CDM Source object.
CdmSource() - Constructor for class eu.etaxonomy.cdm.config.CdmSource
 
CDMSOURCE_FILE_NAME - Static variable in class eu.etaxonomy.cdm.config.CdmPersistentXMLSource
CDM sources config file name
CDMSOURCE_PATH - Static variable in class eu.etaxonomy.cdm.config.CdmPersistentXMLSource
Directory path of the template CDM sources config file - this file is used in the case of the very first call to persist sources see CdmApplicationUtils.getWritableResourceDir()
CdmSourceException - Exception in eu.etaxonomy.cdm.config
Exception class which wraps around exceptions related to Cdm Source functionality
CdmSourceException(String) - Constructor for exception eu.etaxonomy.cdm.config.CdmSourceException
Constructor which simply uses the error message
CdmSourceException(String, String) - Constructor for exception eu.etaxonomy.cdm.config.CdmSourceException
 
CdmSpringMVCConfig - Class in eu.etaxonomy.cdm.remote.config
This is the main configuration for spring MVC application context.
CdmSpringMVCConfig() - Constructor for class eu.etaxonomy.cdm.remote.config.CdmSpringMVCConfig
 
CdmSpringMVCConfigDefault - Class in eu.etaxonomy.cdm.remote.config
 
CdmSpringMVCConfigDefault() - Constructor for class eu.etaxonomy.cdm.remote.config.CdmSpringMVCConfigDefault
 
CdmStringMapper - Class in eu.etaxonomy.cdm.io.common.mapping.berlinModel
 
CdmStringMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.berlinModel.CdmStringMapper
 
CdmTcsXmlImport - Class in eu.etaxonomy.cdm.io.tcsxml.in
This class was created just as a test class to implement the according integration test.
CdmTcsXmlImport() - Constructor for class eu.etaxonomy.cdm.io.tcsxml.in.CdmTcsXmlImport
 
CdmTermCacher - Class in eu.etaxonomy.cdm.api.cache
CDM Entity Cacher class which handles the caching of Defined Terms.
CdmTermCacher() - Constructor for class eu.etaxonomy.cdm.api.cache.CdmTermCacher
 
CdmTextElementMapper - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmTextElementMapper(String, String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmTextElementMapper
 
CdmTextElementMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmTextElementMapper
 
CdmTransactionalIntegrationTest - Class in eu.etaxonomy.cdm.test.integration
Abstract base class for integration testing a spring / hibernate application using the unitils testing framework and dbunit.
CdmTransactionalIntegrationTest() - Constructor for class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest
 
CdmTransactionalIntegrationTestExample - Class in eu.etaxonomy.cdm.test.integration
This is only an example for am implementation of the CdmTransactionalIntegrationTest which is never meant to be executed.
CdmTransactionalIntegrationTestExample() - Constructor for class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTestExample
 
CdmTransactionalIntegrationTestWithSecurity - Class in eu.etaxonomy.cdm.test.integration
 
CdmTransactionalIntegrationTestWithSecurity() - Constructor for class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTestWithSecurity
 
CdmTransientEntityAndUuidCacher - Class in eu.etaxonomy.cdm.cache
Complements the CdmTransientEntityCacher by the ability to get CDM entities from the cache by the UUID.
CdmTransientEntityAndUuidCacher(String) - Constructor for class eu.etaxonomy.cdm.cache.CdmTransientEntityAndUuidCacher
 
CdmTransientEntityAndUuidCacher(Object) - Constructor for class eu.etaxonomy.cdm.cache.CdmTransientEntityAndUuidCacher
 
CdmTransientEntityCacher - Class in eu.etaxonomy.cdm.cache
This cache handle transient (id>0) and volatile (id=0) CdmBase object.
CdmTransientEntityCacher(String) - Constructor for class eu.etaxonomy.cdm.cache.CdmTransientEntityCacher
 
CdmTransientEntityCacher(Object) - Constructor for class eu.etaxonomy.cdm.cache.CdmTransientEntityCacher
 
CdmTypePropertyEditor - Class in eu.etaxonomy.cdm.remote.editor
 
CdmTypePropertyEditor() - Constructor for class eu.etaxonomy.cdm.remote.editor.CdmTypePropertyEditor
 
cdmTypeRestriction - Variable in class eu.etaxonomy.cdm.api.service.search.LuceneSearch
classFilter
CdmTypeScanner<T> - Class in eu.etaxonomy.cdm.model
 
CdmTypeScanner(boolean, boolean) - Constructor for class eu.etaxonomy.cdm.model.CdmTypeScanner
 
CdmUnclearMapper - Class in eu.etaxonomy.cdm.io.tcsrdf
 
CdmUnclearMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmUnclearMapper
 
CdmUnclearMapper(String) - Constructor for class eu.etaxonomy.cdm.io.tcsrdf.CdmUnclearMapper
 
CdmUpdater - Class in eu.etaxonomy.cdm.database.update
This class launches CDM model updates.
CdmUpdater() - Constructor for class eu.etaxonomy.cdm.database.update.CdmUpdater
 
CdmUriMapper - Class in eu.etaxonomy.cdm.io.common.mapping.berlinModel
 
CdmUriMapper(String, String) - Constructor for class eu.etaxonomy.cdm.io.common.mapping.berlinModel.CdmUriMapper
 
CdmUserApprovalHandler - Class in eu.etaxonomy.cdm.remote.oauth2
 
CdmUserApprovalHandler() - Constructor for class eu.etaxonomy.cdm.remote.oauth2.CdmUserApprovalHandler
 
CdmUserHelper - Class in eu.etaxonomy.cdm.api.utility
 
CdmUserHelper() - Constructor for class eu.etaxonomy.cdm.api.utility.CdmUserHelper
 
CdmUtils - Class in eu.etaxonomy.cdm.common
 
CdmUtils() - Constructor for class eu.etaxonomy.cdm.common.CdmUtils
 
CEBUANO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CELTIC_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CENTRAL_AMERICAN_INDIAN_OTHER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CENTRAL_KHMER() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CENTRALAFRICANREPUBLIC() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CGLibEnhancedBeanProcessorMatcher - Class in eu.etaxonomy.cdm.remote.json.processor.matcher
 
CGLibEnhancedBeanProcessorMatcher() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.matcher.CGLibEnhancedBeanProcessorMatcher
 
CHADREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CHAGATAI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHAMICS() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHAMORRO() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
changeDataSource(ICdmDataSource) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeDataSource(ICdmDataSource, DbSchemaValidation) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeDataSource(ICdmDataSource, DbSchemaValidation, boolean) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeDataSource(ICdmDataSource, DbSchemaValidation, boolean, List<ApplicationListener>) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
Changes the ApplicationContext to the new dataSource
changeHomotypicalGroupOfSynonym(Synonym, HomotypicalGroup, Taxon, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Changes the homotypic group of a synonym into the new homotypic group.
changeHomotypicalGroupOfSynonym(Synonym, HomotypicalGroup, Taxon, boolean) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changePassword(String, String) - Method in class eu.etaxonomy.cdm.api.service.UserService
Changes the own password of in the database of the user which is currently authenticated.
changePasswordForUser(String, String) - Method in interface eu.etaxonomy.cdm.api.service.IUserService
 
changePasswordForUser(String, String) - Method in class eu.etaxonomy.cdm.api.service.UserService
 
changeRelatedTaxonToSynonym(Taxon, Taxon, TaxonRelationshipType, SynonymType) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Change a related concept into synonym
changeRelatedTaxonToSynonym(UUID, UUID, TaxonRelationshipType, SynonymType) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
 
changeRelatedTaxonToSynonym(UUID, UUID, TaxonRelationshipType, SynonymType) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changeRelatedTaxonToSynonym(Taxon, Taxon, TaxonRelationshipType, SynonymType) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changeSynonymToAcceptedTaxon(Synonym, Taxon, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Changes a synonym into an accepted taxon and removes the synonym relationship to the given accepted taxon.
changeSynonymToAcceptedTaxon(UUID, UUID, UUID, boolean) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
 
changeSynonymToAcceptedTaxon(Synonym, Taxon, boolean) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changeSynonymToAcceptedTaxon(UUID, UUID, UUID, boolean) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changeSynonymToRelatedTaxon(Synonym, Taxon, TaxonRelationshipType, Reference, String) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
Change a synonym into a related concept
changeSynonymToRelatedTaxon(UUID, UUID, TaxonRelationshipType, Reference, String) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonService
 
changeSynonymToRelatedTaxon(UUID, UUID, TaxonRelationshipType, Reference, String) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changeSynonymToRelatedTaxon(Synonym, Taxon, TaxonRelationshipType, Reference, String) - Method in class eu.etaxonomy.cdm.api.service.TaxonServiceImpl
 
changeType(String, ICdmDataSource, IProgressMonitor, CaseType, SchemaUpdateResult) - Method in class eu.etaxonomy.cdm.database.update.ColumnTypeChanger
 
CHAR - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
CHARACTER - Static variable in class eu.etaxonomy.cdm.io.descriptive.owl.OwlUtil
 
Character - Class in eu.etaxonomy.cdm.model.description
A subclass of the Feature class that is meant for handling Features/Characters for descriptions in the narrow sense of describing an object.
Character() - Constructor for class eu.etaxonomy.cdm.model.description.Character
Deprecated.
Character(TermNode, TermNode, String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.Character
Class constructor: creates a new character instance associated with the given structure and property node with a description (in the default language), a label and a label abbreviation.
characterData() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
Returns a list of all description items which
CharacterOwlImport - Class in eu.etaxonomy.cdm.io.descriptive.owl.in
 
CharacterOwlImport() - Constructor for class eu.etaxonomy.cdm.io.descriptive.owl.in.CharacterOwlImport
 
characters(char[], int, int) - Method in class eu.etaxonomy.cdm.io.common.ImportHandlerBase
 
charIsSimpleType(String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Text indicating that type information is following but no information about the type of the type
CharOrder() - Constructor for class eu.etaxonomy.cdm.io.markup.MarkupFeatureImport.CharOrder
 
CHECHEN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
check(STATE) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
check(STATE) - Method in interface eu.etaxonomy.cdm.io.common.ICdmIO
 
checkAdditionalContents(Element, IXmlMapper[], CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[]) - Method in class eu.etaxonomy.cdm.io.tcsrdf.TcsRdfImportBase
 
checkAdditionalContents(Element, CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[], CdmSingleAttributeXmlMapperBase[]) - Method in class eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportBase
 
checkAndRemoveAttributeValue(Map<String, Attribute>, String, String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Checks if the given attribute exists and has the given value.
checkAreaMarkedHidden(Set<MarkerType>, NamedArea) - Static method in class eu.etaxonomy.cdm.api.utility.DescriptionUtility
 
checkColumnExists(String, String) - Method in class eu.etaxonomy.cdm.io.common.Source
Checks if an attribute exists in the database schema.
checkConnection() - Method in class eu.etaxonomy.cdm.config.CdmSource
 
checkConnection() - Method in interface eu.etaxonomy.cdm.config.ICdmSource
Tests, if a database connection can be established.
checkConnection() - Method in class eu.etaxonomy.cdm.database.WrappedCdmDataSource
 
checkDbColumnExists() - Method in class eu.etaxonomy.cdm.io.common.mapping.DbSingleAttributeImportMapperBase
 
checkDigit() - Method in class eu.etaxonomy.cdm.model.agent.ORCID
Generates check digit as per ISO 7064 11,2.
checkExistsAccessType(IPublishable, boolean, Class<S>, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.BaseController
 
checkExistsAndAccess(S, boolean, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.BaseController
Checks if an IPublishable was found and if it is publish.
checkExistsSubtreeAndAccess(S, TaxonNode, boolean, HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.controller.TaxonController
Checks if a taxonBase is public and belongs to a subtree as accepted taxon or synonym.
checkForPreApproval(AuthorizationRequest, Authentication) - Method in class eu.etaxonomy.cdm.remote.oauth2.CdmUserApprovalHandler
Allows automatic approval for a white list of clients in the implicit grant case.
checkForRole(Authentication) - Method in interface eu.etaxonomy.cdm.api.utility.RoleProbe
 
checkForRole(Authentication) - Method in class eu.etaxonomy.cdm.api.utility.RoleProber
checkIgnoreMapper(IDbImportMapper, ResultSet) - Method in interface eu.etaxonomy.cdm.io.common.mapping.ICheckIgnoreMapper
Decides if the mapper should be ignored for the current record of the import result set.
ChecklistDemoController - Class in eu.etaxonomy.cdm.remote.controller.checklist
 
ChecklistDemoController() - Constructor for class eu.etaxonomy.cdm.remote.controller.checklist.ChecklistDemoController
 
checkMandatoryElement(boolean, StartElement, String) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Fires an mandatory element is missing event if exists is false.
checkMandatoryText(String, XMLEvent) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Checks if a mandatory text is not empty or null.
checkNoAttributes(Map<String, Attribute>, XMLEvent) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Throws an unexpected attributes event if the event has any attributes.
checkNoAttributes(XMLEvent) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Throws an unexpected attributes event if the event has any attributes.
checkNoAttributes(XMLEvent, int, String...) - Method in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
Throws an unexpected attributes event if the event has any attributes except those mentioned in "exceptions".
checkNotInPriorView(String) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase
 
checkPublished(IPublishable, boolean, String) - Method in class eu.etaxonomy.cdm.api.service.ServiceBase
Throws an exception if the publishable entity should not be published.
checkReferencePublished(Reference) - Method in class eu.etaxonomy.cdm.api.service.registration.RegistrationWorkingSetService
 
checkRegistrationExistsFor(TaxonName) - Method in interface eu.etaxonomy.cdm.api.service.IRegistrationService
 
checkRegistrationExistsFor(TaxonName) - Method in class eu.etaxonomy.cdm.api.service.RegistrationServiceImpl
 
checkServiceAvailable(String, int) - Static method in class eu.etaxonomy.cdm.common.UriUtils
 
checkSqlServerColumnExists(Source, String, String) - Method in class eu.etaxonomy.cdm.io.common.DbExportBase
 
checkSqlServerColumnExists(Source, String, String) - Method in class eu.etaxonomy.cdm.io.common.DbImportBase
 
checkSqlServerColumnExists() - Method in class eu.etaxonomy.cdm.io.common.mapping.out.DbSingleAttributeExportMapperBase
 
checkSqlServerColumnExists(Source, String, String) - Method in class eu.etaxonomy.cdm.io.tcsxml.out.TcsXmlExportBase
 
checkTermType(IHasTermType) - Method in class eu.etaxonomy.cdm.model.term.TermRelationBase
Throws IllegalArgumentException if the given term has not the same term type as this term or if term type is null.
checkTermTypeEqualOrDescendant(IHasTermType, IHasTermType) - Static method in interface eu.etaxonomy.cdm.model.term.IHasTermType
Checks if term types of term1 and term2 are either equal term type of descendant is kind of term type of ancestor.
checkTermTypeNull(IHasTermType) - Static method in interface eu.etaxonomy.cdm.model.term.IHasTermType
Checks if term type of term1 is not null.
checkTermTypes(IHasTermType, IHasTermType) - Static method in interface eu.etaxonomy.cdm.model.term.IHasTermType
Checks if term types of term1 and term2 are equal and both term types are not null.
CHEROKEE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHEYENNE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHIBCHA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHICHEWA_CHEWA_NYANJA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
childCount() - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Returns the number of children nodes of this feature node.
children - Variable in class eu.etaxonomy.cdm.common.TreeNode
 
ChildTaxaMustBeLowerRankThanParent - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
ChildTaxaMustBeLowerRankThanParentValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
ChildTaxaMustBeLowerRankThanParentValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.ChildTaxaMustBeLowerRankThanParentValidator
 
ChildTaxaMustDeriveNameFromParent - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
ChildTaxaMustDeriveNameFromParentValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
ChildTaxaMustDeriveNameFromParentValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.ChildTaxaMustDeriveNameFromParentValidator
 
ChildTaxaMustNotSkipRanks - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
ChildTaxaMustNotSkipRanksValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
ChildTaxaMustNotSkipRanksValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.ChildTaxaMustNotSkipRanksValidator
 
CHILEREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CHINAPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CHINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHINOOK_JARGON() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHIPEWYAN_DENE_SULINE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHOCTAW() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHRISTMASISLAND() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CHROMOSOME_NUMBER() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "chromosome number" feature.
CHURCH_SLAVIC_OLD_SLAVONIC_ETC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHUUKESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CHUVASH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
citation - Variable in class eu.etaxonomy.cdm.api.service.dto.DerivateDTO
 
CITATION - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
CITATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "citation" feature.
CITATION_TYPE_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
CLASS - Static variable in class eu.etaxonomy.cdm.ext.occurrence.gbif.GbifJsonOccurrenceParser
 
CLASS - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
CLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
CLASS_KEY - Static variable in class eu.etaxonomy.cdm.ext.occurrence.gbif.GbifJsonOccurrenceParser
 
ClassAdapter - Class in eu.etaxonomy.cdm.jaxb
 
ClassAdapter() - Constructor for class eu.etaxonomy.cdm.jaxb.ClassAdapter
 
ClassBaseTypeUpdater - Class in eu.etaxonomy.cdm.database.update
Updates the base type of a class.
ClassBaseTypeUpdater(List<ISchemaUpdaterStep>, String, String, boolean, boolean, boolean) - Constructor for class eu.etaxonomy.cdm.database.update.ClassBaseTypeUpdater
 
ClassChanger - Class in eu.etaxonomy.cdm.database.update
 
ClassChanger(List<ISchemaUpdaterStep>, String, String, String, String[], boolean, boolean, boolean, boolean) - Constructor for class eu.etaxonomy.cdm.database.update.ClassChanger
 
CLASSICAL_NEWARI_OLD_NEWARI_CLASSICAL_NEPAL_BHASA() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CLASSICAL_SYRIAC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
Classification - Class in eu.etaxonomy.cdm.model.taxon
 
Classification() - Constructor for class eu.etaxonomy.cdm.model.taxon.Classification
 
Classification(String, Reference, Language) - Constructor for class eu.etaxonomy.cdm.model.taxon.Classification
 
CLASSIFICATION_ALL - Static variable in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Classifcation 'all' key
CLASSIFICATION_DEFAULT - Static variable in class eu.etaxonomy.cdm.remote.controller.dto.NameCatalogueController
Classifcation 'default' key
CLASSIFICATION_ID - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
CLASSIFICATION_TITLE - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
ClassificationController - Class in eu.etaxonomy.cdm.remote.controller
 
ClassificationController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationController
 
ClassificationDaoHibernateImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.taxon
 
ClassificationDaoHibernateImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.ClassificationDaoHibernateImpl
 
classificationFilter - Variable in class eu.etaxonomy.cdm.api.service.config.IncludedTaxonConfiguration
 
ClassificationListController - Class in eu.etaxonomy.cdm.remote.controller
 
ClassificationListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationListController
 
classificationLookup(Classification) - Method in class eu.etaxonomy.cdm.api.service.ClassificationServiceImpl
 
classificationLookup(Classification) - Method in interface eu.etaxonomy.cdm.api.service.IClassificationService
 
classificationLookup(Classification) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxon.ClassificationDaoHibernateImpl
 
classificationLookup(Classification) - Method in interface eu.etaxonomy.cdm.persistence.dao.taxon.IClassificationDao
 
ClassificationLookupDTO - Class in eu.etaxonomy.cdm.persistence.dto
 
ClassificationLookupDTO(Classification) - Constructor for class eu.etaxonomy.cdm.persistence.dto.ClassificationLookupDTO
 
ClassificationPortalController - Class in eu.etaxonomy.cdm.remote.controller
The ClassificationController class is a Spring MVC Controller.
ClassificationPortalController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationPortalController
 
ClassificationPortalListController - Class in eu.etaxonomy.cdm.remote.controller
The ClassificationController class is a Spring MVC Controller.
ClassificationPortalListController() - Constructor for class eu.etaxonomy.cdm.remote.controller.ClassificationPortalListController
 
ClassificationRootNodeUpdater - Class in eu.etaxonomy.cdm.database.update.v31_33
Creates empty root nodes for each classification.
ClassificationRootNodeUpdater(List<ISchemaUpdaterStep>, String) - Constructor for class eu.etaxonomy.cdm.database.update.v31_33.ClassificationRootNodeUpdater
 
classifications - Variable in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
classificationService - Variable in class eu.etaxonomy.cdm.api.service.util.CacheUpdater
 
ClassificationServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
ClassificationServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.ClassificationServiceImpl
 
ClassInfoBridge - Class in eu.etaxonomy.cdm.hibernate.search
Lucene index class bridge which sets class information for the objects into the index.
ClassInfoBridge() - Constructor for class eu.etaxonomy.cdm.hibernate.search.ClassInfoBridge
 
ClassJSONValueProcessor - Class in eu.etaxonomy.cdm.remote.json.processor.value
 
ClassJSONValueProcessor() - Constructor for class eu.etaxonomy.cdm.remote.json.processor.value.ClassJSONValueProcessor
 
classKey - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
className - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
classString - Variable in class eu.etaxonomy.cdm.database.types.Db2DatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.MariaDbDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.MySQLDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.OdbcDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.OracleDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.PostgreSQLDatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.SqlServer2005DatabaseType
 
classString - Variable in class eu.etaxonomy.cdm.database.types.SybaseDatabaseType
 
clazz - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CleanSweepInsertLoadStrategy - Class in eu.etaxonomy.cdm.test.unitils
Will clear all data in the DataSet except all term related tables before doing a CLEAN_INSERT:
CleanSweepInsertLoadStrategy() - Constructor for class eu.etaxonomy.cdm.test.unitils.CleanSweepInsertLoadStrategy
 
clear() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
 
clear() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolderMock
 
clear() - Method in interface eu.etaxonomy.cdm.api.service.IService
 
clear() - Method in class eu.etaxonomy.cdm.api.service.ServiceBase
 
clear() - Method in class eu.etaxonomy.cdm.cache.CdmTransientEntityCacher
 
clear(NamedArea) - Method in class eu.etaxonomy.cdm.ext.geo.GeoServiceAreaAnnotatedMapping
 
clear(NamedArea) - Method in interface eu.etaxonomy.cdm.ext.geo.IGeoServiceAreaMapping
Clear the mapping for the given NamedArea
clear() - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao
 
clear() - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase
 
clear() - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
clear() - Method in class eu.etaxonomy.cdm.strategy.cache.TaggedTextBuilder
 
clearAuthentication() - Method in class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest
 
clearCache() - Method in class eu.etaxonomy.cdm.io.cdm2cdm.Cdm2CdmImportBase
 
clearContext() - Static method in class eu.etaxonomy.cdm.model.view.context.AuditEventContextHolder
 
clearContext() - Method in interface eu.etaxonomy.cdm.model.view.context.AuditEventContextHolderStrategy
Clears the context by setting the AuditEventContext in the current thread to null
clearContext() - Method in class eu.etaxonomy.cdm.model.view.context.GlobalAuditEventContextHolderStrategy
 
clearContext() - Method in class eu.etaxonomy.cdm.model.view.context.InheritableThreadLocalAuditEventContextHolderStrategy
 
clearContext() - Method in class eu.etaxonomy.cdm.model.view.context.ThreadLocalAuditEventContextHolderStrategy
 
clearContextKey() - Static method in class eu.etaxonomy.cdm.database.NamedContextHolder
 
clearDescriptions() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
 
clearExistingRecordIds() - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoBase
 
clearExistingRecordIds() - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
 
clearSession() - Method in class eu.etaxonomy.cdm.api.application.CdmRepository
clears the current Session
clearWarnings() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
CLOB_LENGTH - Static variable in class eu.etaxonomy.cdm.model.common.CdmBase
 
clone() - Method in class eu.etaxonomy.cdm.model.agent.Address
Clones this Address.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Contact
Clones this Contact.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Clones this Institution.
clone() - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Clones this InstitutionalMembership.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Person
Clones this Person.
clone() - Method in class eu.etaxonomy.cdm.model.agent.Team
Clones this Team.
clone() - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
clone() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.CdmLinkBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Credit
 
clone() - Method in class eu.etaxonomy.cdm.model.common.EventBase
Clones this event base.
clone() - Method in class eu.etaxonomy.cdm.model.common.Extension
 
clone() - Method in class eu.etaxonomy.cdm.model.common.ExternallyManaged
 
clone() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableSource
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Identifier
 
clone() - Method in class eu.etaxonomy.cdm.model.common.LanguageString
 
clone() - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Marker
 
clone() - Method in class eu.etaxonomy.cdm.model.common.MultilanguageText
Clones this multi-language text.
clone() - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
Clones this relationship.
clone() - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.SourcedEntityBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
clone() - Method in class eu.etaxonomy.cdm.model.common.VerbatimTimePeriod
 
clone() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
Clones this versionable entity.
clone() - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
Clones this categorical data.
clone() - Method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
Clones this common name.
clone() - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Clones this description.
clone() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Clones the description element.
clone(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Clones the description element.
The new element is added to the description.
clone() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementSource
 
clone() - Method in class eu.etaxonomy.cdm.model.description.DescriptiveDataSet
Clones this DescriptiveDataSet.
clone() - Method in class eu.etaxonomy.cdm.model.description.Distribution
Clones this distribution.
clone() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
clone() - Method in class eu.etaxonomy.cdm.model.description.FeatureState
 
clone() - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
Clones this individuals association.
clone() - Method in class eu.etaxonomy.cdm.model.description.KeyStatement
Clones this KeyStatement.
clone() - Method in class eu.etaxonomy.cdm.model.description.MediaKey
Clones this MediaKey.
clone() - Method in class eu.etaxonomy.cdm.model.description.MultiAccessKey
Clones this MultiAccessKey.
clone() - Method in class eu.etaxonomy.cdm.model.description.PolytomousKey
Clones this PolytomousKey.
clone() - Method in class eu.etaxonomy.cdm.model.description.PolytomousKeyNode
Clones this PolytomousKeyNode.
clone() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
Clones this quantitative data.
clone() - Method in class eu.etaxonomy.cdm.model.description.SpecimenDescription
Clones this specimen description.
clone() - Method in class eu.etaxonomy.cdm.model.description.StateData
Clones this state data.
clone() - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
Clones this statistical measurement value.
clone() - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
Clones this taxon description.
clone() - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
Clones this taxon interaction.
clone() - Method in class eu.etaxonomy.cdm.model.description.TaxonNameDescription
Clones this taxon name description.
clone() - Method in class eu.etaxonomy.cdm.model.description.TextData
Clones this text data.
clone() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
Clones this NamedArea.
clone() - Method in class eu.etaxonomy.cdm.model.location.Point
Clones this point.
clone() - Method in class eu.etaxonomy.cdm.model.media.ExternalLink
Clones this external link.
clone() - Method in class eu.etaxonomy.cdm.model.media.IdentifiableMediaEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.media.Media
 
clone() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
clone() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
clone() - Method in class eu.etaxonomy.cdm.model.media.Rights
 
clone() - Method in class eu.etaxonomy.cdm.model.molecular.Amplification
Clones this amplification.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.AmplificationResult
Clones this amplification.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.Cloning
Clones this Cloning.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.DnaQuality
Clones this dna quality.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
Clones this dna sample.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
Clones this phylogenetic tree.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.Primer
Clones this primer.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
Clones this sequence.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.SequenceString
Clones this sequence.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.SingleRead
Clones this sequence.
clone() - Method in class eu.etaxonomy.cdm.model.molecular.SingleReadAlignment
 
clone() - Method in class eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift
 
clone() - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
Clones this hybrid relationship.
clone() - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
 
clone() - Method in class eu.etaxonomy.cdm.model.name.NameRelationship
Clones this name relationship.
clone() - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Clones this name type.
clone() - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
Clones this nomenclatural status.
clone() - Method in class eu.etaxonomy.cdm.model.name.RuleConsidered
Clones this rule considered.
clone() - Method in class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
Clones this type specimen.
clone() - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Clones this taxon name.
clone() - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Clones this type designation.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
Clones this collection.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Clones this derivation event.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnit
Clones this derivedUnit.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
Clones this determination event.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.FieldUnit
Clones this field unit.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
Clones this gathering event.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.MaterialOrMethodEvent
Clones this Cloning.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.MediaSpecimen
Clones this dna sample.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.PreservationMethod
Clones this Cloning.
clone() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
clone() - Method in class eu.etaxonomy.cdm.model.permission.CdmAuthority
 
clone() - Method in class eu.etaxonomy.cdm.model.permission.GrantedAuthorityImpl
Clones this Granted Authority.
clone() - Method in class eu.etaxonomy.cdm.model.permission.Group
Clones this Group.
clone() - Method in class eu.etaxonomy.cdm.model.permission.User
Clones this User.
clone() - Method in class eu.etaxonomy.cdm.model.reference.CdmLinkSource
 
clone() - Method in interface eu.etaxonomy.cdm.model.reference.IReference
 
clone() - Method in class eu.etaxonomy.cdm.model.reference.OriginalSourceBase
 
clone() - Method in class eu.etaxonomy.cdm.model.reference.Reference
Clones this reference.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.Classification
Clones this classification.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
 
clone() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Clones this taxon.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Clones this taxon.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Clones this taxon node.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNodeAgentRelation
Clones this taxon node agent relation.
clone() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationship
Clones this TaxonRelationship.
clone() - Method in class eu.etaxonomy.cdm.model.term.DefinedTermBase
Clones this DefinedTermBase.
clone() - Method in class eu.etaxonomy.cdm.model.term.OrderedTermBase
Clones this OrderedTermBase.
clone() - Method in class eu.etaxonomy.cdm.model.term.Representation
Clones this Representation.
clone() - Method in class eu.etaxonomy.cdm.model.term.TermBase
Clones this TermBase.
clone() - Method in class eu.etaxonomy.cdm.model.term.TermGraph
Clones this TermGraph.
clone() - Method in class eu.etaxonomy.cdm.model.term.TermGraphBase
 
clone() - Method in class eu.etaxonomy.cdm.model.term.TermNode
Clones this TermNode.
clone() - Method in class eu.etaxonomy.cdm.model.term.TermRelation
 
clone() - Method in class eu.etaxonomy.cdm.model.term.TermRelationBase
 
clone() - Method in class eu.etaxonomy.cdm.model.term.TermTree
Clones this TermTree.
clone() - Method in class eu.etaxonomy.cdm.model.term.TermVocabulary
Clones this TermVocabulary.
cloneClassification(UUID, String, Reference, TaxonRelationshipType) - Method in class eu.etaxonomy.cdm.api.service.ClassificationServiceImpl
 
cloneClassification(UUID, String, Reference, TaxonRelationshipType) - Method in interface eu.etaxonomy.cdm.api.service.IClassificationService
Clones an existing classification including all taxa and taxon nodes.
cloneDescendants() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNode
Returns a set containing a clone of this node and of all nodes that are descendants of this node
cloneDescendants() - Method in class eu.etaxonomy.cdm.model.term.TermNode
 
cloneLanguageString(Map<Language, LanguageString>) - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
Convenience method to clone a LanguageString map
cloneTypeDesignation(UUID, SpecimenTypeDesignation, String, String, String, UUID, SpecimenTypeDesignationStatus) - Method in interface eu.etaxonomy.cdm.api.service.INameService
Creates specimen duplicate based on the given type specimen which will be assigned as a type of the given name.
The specimen will only differ in accession number, collection and type status and will be attached to the same FieldUnit
cloneTypeDesignation(UUID, SpecimenTypeDesignation, String, String, String, UUID, SpecimenTypeDesignationStatus) - Method in class eu.etaxonomy.cdm.api.service.NameServiceImpl
 
Cloning - Class in eu.etaxonomy.cdm.model.molecular
Cloning is a method used in DNA amplification for multiplying the base material.
Cloning() - Constructor for class eu.etaxonomy.cdm.model.molecular.Cloning
 
Cloning(DefinedTerm, String, String, Primer, Primer) - Constructor for class eu.etaxonomy.cdm.model.molecular.Cloning
 
close() - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
closes the application
close() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Free resources bound to this conversationHolder
close() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolderMock
Free resources bound to this conversationHolder
close() - Method in class eu.etaxonomy.cdm.api.facade.DerivedUnitFacade
Closes this facade.
close() - Method in interface eu.etaxonomy.cdm.io.common.ITaxonNodeOutStreamPartitioner
 
close() - Method in class eu.etaxonomy.cdm.io.common.ResultSetProxy
 
close() - Method in class eu.etaxonomy.cdm.io.common.TaxonNodeOutStreamPartitioner
 
close() - Method in class eu.etaxonomy.cdm.io.common.TaxonNodeOutStreamPartitionerConcurrent
 
close() - Method in class eu.etaxonomy.cdm.io.common.ZipWriter
 
close() - Method in class eu.etaxonomy.cdm.io.markup.LookAheadEventReader
 
close() - Method in class eu.etaxonomy.cdm.model.common.LSIDWSDLLocator
 
close(Statement) - Static method in class eu.etaxonomy.cdm.persistence.dao.jdbc.JdbcDaoUtils
Closes a JDBC Statement while trapping and suppressing any SQLException that may be thrown in the process.
close(Connection) - Static method in class eu.etaxonomy.cdm.persistence.dao.jdbc.JdbcDaoUtils
 
closeApplicationContext() - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
closes the application context
closeOpenConnections() - Method in class eu.etaxonomy.cdm.config.CdmSource
 
closeOpenConnections() - Method in interface eu.etaxonomy.cdm.config.ICdmSource
Closes any open connections to this CDM Source
closeOpenConnections() - Method in class eu.etaxonomy.cdm.database.WrappedCdmDataSource
 
closeWriter(PrintWriter, CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoBase
Closes the writer
closeWriter(XMLStreamWriter, CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoBase
Closes the writer.
closeWriter(PrintWriter, CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
Closes the writer
closeWriter(XMLStreamWriter, CsvTaxExportStateRedlist) - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvExportBaseRedlist
Closes the writer.
closeWriter(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
Closes the writer
closeWriter(XMLStreamWriter, DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaExportBase
Closes the writer.
closeZip() - Method in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoExportState
 
closeZip() - Method in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvTaxExportStateRedlist
 
closeZip(DwcaTaxExportState) - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaResultWriter
 
closeZip() - Method in class eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportState
 
COCOSISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
code - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Error
 
CODEN - Variable in class eu.etaxonomy.cdm.ext.openurl.MobotOpenUrlQuery
 
COLLATION - Static variable in class eu.etaxonomy.cdm.ext.ipni.IpniService
 
COLLATION - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
COLLATION_COLUMN - Static variable in class eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImportBase
 
Collection - Class in eu.etaxonomy.cdm.model.occurrence
Instances of this class represent a collection for primary biodiversity data.
Collection() - Constructor for class eu.etaxonomy.cdm.model.occurrence.Collection
Constructor
COLLECTION_DATE - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
COLLECTION_ID - Static variable in class eu.etaxonomy.cdm.ext.occurrence.gbif.GbifJsonOccurrenceParser
 
COLLECTION_SEPARATOR - Static variable in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoRecordBase
 
COLLECTION_SEPARATOR - Static variable in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
COLLECTION_SEPARATOR - Static variable in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
collectionCode - Variable in class eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206DataHolder
 
collectionCode - Variable in class eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSythesysExcelImport
 
collectionCode - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
collectionCode - Variable in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXDataHolder
 
collectionCode - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CollectionDaoHibernateImpl - Class in eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence
 
CollectionDaoHibernateImpl() - Constructor for class eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence.CollectionDaoHibernateImpl
 
CollectionDefaultCacheStrategy - Class in eu.etaxonomy.cdm.strategy.cache.occurrence
A default cache strategy for collections.
CollectionDefaultCacheStrategy() - Constructor for class eu.etaxonomy.cdm.strategy.cache.occurrence.CollectionDefaultCacheStrategy
 
CollectionDTO - Class in eu.etaxonomy.cdm.api.service.dto
 
CollectionDTO(String, String, Institution, String) - Constructor for class eu.etaxonomy.cdm.api.service.dto.CollectionDTO
 
CollectionDTO(Collection) - Constructor for class eu.etaxonomy.cdm.api.service.dto.CollectionDTO
 
CollectionExportMapping<STATE extends DbExportStateBase<CONFIG,TRANSFORM>,CONFIG extends DbExportConfiguratorBase<STATE,TRANSFORM,Source>,TRANSFORM extends IExportTransformer> - Class in eu.etaxonomy.cdm.io.common.mapping.out
 
CollectionField(Object, ProxyUtils.CollectionType) - Constructor for class eu.etaxonomy.cdm.cache.ProxyUtils.CollectionField
 
collectionID - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
collectionID - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
collectionPattern - Static variable in class eu.etaxonomy.cdm.strategy.parser.SpecimenTypeParser
 
collections - Variable in class eu.etaxonomy.cdm.io.jaxb.DataSet
 
collections - Variable in class eu.etaxonomy.cdm.io.specimen.SpecimenImportStateBase
 
collectionService - Variable in class eu.etaxonomy.cdm.api.service.NameServiceImpl
 
collectionService - Variable in class eu.etaxonomy.cdm.api.service.util.CacheUpdater
 
CollectionServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
CollectionServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.CollectionServiceImpl
 
collectionString - Variable in class eu.etaxonomy.cdm.strategy.parser.SpecimenTypeParser.TypeInfo
 
CollectionVoter - Class in eu.etaxonomy.cdm.persistence.hibernate.permission.voter
 
CollectionVoter() - Constructor for class eu.etaxonomy.cdm.persistence.hibernate.permission.voter.CollectionVoter
 
collector - Variable in class eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery
 
COLLECTOR_NUMBER - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
COLLECTOR_STRING - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
collectorsNumber - Variable in class eu.etaxonomy.cdm.ext.occurrence.OccurenceQuery
 
collectorTitle - Variable in class eu.etaxonomy.cdm.model.agent.TeamOrPersonBase
 
COLOMBIAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
ColumnAdder - Class in eu.etaxonomy.cdm.database.update
 
ColumnAdder(List<? extends ISchemaUpdaterStep>, String, String, String, Datatype, Integer, boolean, Object, boolean, String) - Constructor for class eu.etaxonomy.cdm.database.update.ColumnAdder
 
columnAdders - Variable in class eu.etaxonomy.cdm.database.update.TableCreator
 
columnAdderStepList - Variable in class eu.etaxonomy.cdm.database.update.ClassBaseTypeUpdater
 
ColumnNameChanger - Class in eu.etaxonomy.cdm.database.update
 
ColumnNameChanger(List<ISchemaUpdaterStep>, String, String, String, String, boolean, Object, Datatype, Integer) - Constructor for class eu.etaxonomy.cdm.database.update.ColumnNameChanger
 
ColumnRemover - Class in eu.etaxonomy.cdm.database.update
 
ColumnRemover(List<ISchemaUpdaterStep>, String, String, String, boolean) - Constructor for class eu.etaxonomy.cdm.database.update.ColumnRemover
 
ColumnTypeChanger - Class in eu.etaxonomy.cdm.database.update
 
ColumnTypeChanger(List<ISchemaUpdaterStep>, String, String, String, Datatype, Integer, boolean, Object, boolean, String) - Constructor for class eu.etaxonomy.cdm.database.update.ColumnTypeChanger
 
COMB_AUTHORTEAM_FK - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
COMB_EX_AUTHORTEAM_FK - Static variable in enum eu.etaxonomy.cdm.io.cdmLight.CdmLightExportTable
 
COMB_NOV() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "comb.
COMBINATION_ILLEGITIMATE() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "illegitimate combination".
COMBINATION_INVALID() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "invalid combination".
comment - Variable in class eu.etaxonomy.cdm.print.out.mediawiki.WikiFile
 
commit() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Commit the running transaction.
commit(boolean) - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Commit the running transaction but optionally start a new one right away.
commit() - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolderMock
Commit the running transaction.
commit(boolean) - Method in class eu.etaxonomy.cdm.api.conversation.ConversationHolderMock
Commit the running transaction but optionally start a new one right away.
commit() - Method in class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest
Commit and end transaction
commitAndStartNewTransaction() - Method in class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest
 
commitAndStartNewTransaction(String[]) - Method in class eu.etaxonomy.cdm.test.integration.CdmTransactionalIntegrationTest
 
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.api.application.CdmRepository
 
commitTransaction(TransactionStatus) - Method in interface eu.etaxonomy.cdm.api.application.ICdmRepository
 
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.api.service.description.DescriptionAggregationBase
 
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.api.service.util.SortIndexUpdaterWrapper
 
commitTransaction() - Method in interface eu.etaxonomy.cdm.database.ICdmDataSource
Commits the transaction for the given datasource.
commitTransaction() - Method in class eu.etaxonomy.cdm.database.WrappedCdmDataSource
 
commitTransaction(TransactionStatus) - Method in class eu.etaxonomy.cdm.io.common.CdmIoBase
 
commitTransaction(TransactionStatus) - Method in interface eu.etaxonomy.cdm.io.common.IPartitionedIO
 
COMMON_NAME() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "common_name" feature.
COMMON_NAME_REFERENCE() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
COMMON_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.CdmNamespacePrefixMapper
 
COMMON_NAMESPACE - Static variable in class eu.etaxonomy.cdm.jaxb.TDWGNamespacePrefixMapper
 
CommonBeans() - Constructor for class eu.etaxonomy.cdm.remote.config.OAuth2ServerConfiguration.CommonBeans
 
commonService - Variable in class eu.etaxonomy.cdm.api.service.VersionableServiceBase
 
CommonServiceImpl - Class in eu.etaxonomy.cdm.api.service
 
CommonServiceImpl() - Constructor for class eu.etaxonomy.cdm.api.service.CommonServiceImpl
 
CommonTaxonName - Class in eu.etaxonomy.cdm.model.description
This class represents common or vernacular names for taxa.
CommonTaxonName() - Constructor for class eu.etaxonomy.cdm.model.description.CommonTaxonName
Class constructor: creates a new empty common name instance.
COMOROSUNIONOFTHE() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
compare(TreeNode<Set<Distribution>, NamedArea>, TreeNode<Set<Distribution>, NamedArea>) - Method in class eu.etaxonomy.cdm.api.service.DistributionNodeByAreaLabelComparator
 
compare(TypedEntityReference<TypeDesignationBase<?>>, TypedEntityReference<TypeDesignationBase<?>>) - Method in class eu.etaxonomy.cdm.api.service.name.TypedEntityComparator
 
compare(TypeDesignationBase, TypeDesignationBase) - Method in class eu.etaxonomy.cdm.api.service.name.TypeDesignationComparator
 
compare(T, T) - Method in class eu.etaxonomy.cdm.api.service.name.TypeDesignationStatusComparator
 
compare(TreeNode<Set<Distribution>, NamedArea>, TreeNode<Set<Distribution>, NamedArea>) - Method in class eu.etaxonomy.cdm.api.utility.DistributionNodeByAreaOrderComparator
 
compare(String, String) - Method in class eu.etaxonomy.cdm.common.StringComparator
 
compare(NamedArea, NamedArea) - Method in class eu.etaxonomy.cdm.model.common.AlphabeticallyAscendingNamedAreaComparator
 
compare(Integer, Integer) - Method in class eu.etaxonomy.cdm.model.common.OrderIndexComparator
compare(TreeIndex, TreeIndex) - Method in class eu.etaxonomy.cdm.model.common.TreeIndexComparator
 
compare(String, String) - Method in class eu.etaxonomy.cdm.model.metadata.CdmMetaData.VersionComparator
 
compare(HomotypicalGroup, HomotypicalGroup) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroupComparator
 
compare(TaxonName, TaxonName) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroupNameComparator
 
compare(TaxonName, TaxonName, boolean) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroupNameComparator
 
compare(TaxonName, TaxonName) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameComparator
 
compare(TypeDesignationBase<?>, TypeDesignationBase<?>) - Method in class eu.etaxonomy.cdm.model.name.TypeComparator
compare(TaxonBase, TaxonBase) - Method in class eu.etaxonomy.cdm.model.taxon.HomotypicGroupTaxonComparator
 
compare(TaxonBase, TaxonBase) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonComparator
Returns an integer generated by comparing first the nomenclatural status and then the publication years of both taxon names used in the given taxa.
compare(TaxonName, TaxonName, boolean) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonComparator
 
compare(TaxonNode, TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNaturalComparator
 
compare(TaxonNode, TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNodeByNameComparator
 
compare(TaxonNode, TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNodeByRankAndNameComparator
 
compare(T, T) - Method in class eu.etaxonomy.cdm.model.term.OrderedTermComparator
compare(T, T) - Method in class eu.etaxonomy.cdm.model.term.TermIdInVocabularyComparator
 
compare(T, T) - Method in class eu.etaxonomy.cdm.model.term.TermLanguageComparator
 
compare(SortableTaxonNodeQueryResult, SortableTaxonNodeQueryResult) - Method in class eu.etaxonomy.cdm.persistence.dto.SortableTaxonNodeQueryResultComparator
 
compare(TaxonNodeDto, TaxonNodeDto) - Method in class eu.etaxonomy.cdm.persistence.dto.TaxonNodeDtoByNameComparator
 
compare(TaxonNodeDto, TaxonNodeDto) - Method in class eu.etaxonomy.cdm.persistence.dto.TaxonNodeDtoByRankAndNameComparator
 
compare(TaxonNodeDto, TaxonNodeDto) - Method in class eu.etaxonomy.cdm.persistence.dto.TaxonNodeDtoNaturalComparator
 
compareNames(TaxonNode, TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNodeByNameComparator
 
compareNodes(TaxonNode, TaxonNode) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonNodeByNameComparator
 
compareNomIlleg(TaxonName, TaxonName) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroupNameComparator
 
compareNomIlleg(TaxonName, TaxonName) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonComparator
 
compareSeverity(UpdateResult.Status) - Method in enum eu.etaxonomy.cdm.api.service.UpdateResult.Status
 
compareStatus(TaxonName, TaxonName) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroupNameComparator
 
compareStatus(TaxonName, TaxonName) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonComparator
 
compareTo(GeoServiceArea.SubArea) - Method in class eu.etaxonomy.cdm.ext.geo.GeoServiceArea.SubArea
 
compareTo(Object) - Method in class eu.etaxonomy.cdm.model.media.Media
 
compareTo(HybridRelationship) - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
 
compareTo(HybridRelationshipType) - Method in class eu.etaxonomy.cdm.model.name.HybridRelationshipType
 
compareTo(Rank) - Method in class eu.etaxonomy.cdm.model.name.Rank
It is necessary to skip the vocabulary check, otherwise we would have problems in some CacheStrategies, due to uninitialized Vocabularies.
compareTo(Object) - Method in class eu.etaxonomy.cdm.model.permission.GrantedAuthorityImpl
 
compareTo(Object) - Method in class eu.etaxonomy.cdm.model.taxon.Classification
 
compareTo(T) - Method in class eu.etaxonomy.cdm.model.term.DefinedTermBase
Deprecated.
compareTo(T) - Method in class eu.etaxonomy.cdm.model.term.OrderedTermBase
Compares this OrderedTermBase with the specified OrderedTermBase for order.
compareTo(BeanInitNode) - Method in class eu.etaxonomy.cdm.persistence.dao.initializer.BeanInitNode
 
compareTo(AbstractTermDto) - Method in class eu.etaxonomy.cdm.persistence.dto.AbstractTermDto
 
compareToName(TaxonName) - Method in interface eu.etaxonomy.cdm.model.name.ITaxonNameBase
This method compares 2 taxon names on it's name titles and caches.
compareToName(TaxonName) - Method in class eu.etaxonomy.cdm.model.name.TaxonName
 
compareToTaxon(TaxonBase) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
This method compares 2 taxa on it's name titles and caches.
compareVersion(String, String, Integer, IProgressMonitor) - Static method in class eu.etaxonomy.cdm.model.metadata.CdmMetaData
Compares two version string.
complementInitStrategy(Class<CDM_BASE>, List<String>) - Method in class eu.etaxonomy.cdm.remote.controller.BaseController
Implementations of the BaseController can override this method to extend the pathProperties to for example avoid LazyInitializationExceptions which can happen when BaseController.doGetMethod(UUID, Integer, Integer, Integer, Integer, HttpServletRequest, HttpServletResponse) is being used.
complementInitStrategy(Class<CDM_BASE>, List<String>) - Method in class eu.etaxonomy.cdm.remote.controller.NameController
 
complementInitStrategy(Class<CDM_BASE>, List<String>) - Method in class eu.etaxonomy.cdm.remote.controller.NamePortalController
 
COMPLETE() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
completeListSize - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.ResumptionToken
 
composeDistributionInfoFor(EnumSet<DistributionInfoDTO.InfoPart>, UUID, boolean, boolean, Set<MarkerType>, Set<NamedAreaLevel>, Map<PresenceAbsenceTerm, Color>, List<Language>, List<String>, CondensedDistributionRecipe, DistributionOrder) - Method in class eu.etaxonomy.cdm.ext.geo.EditGeoService
 
composeDistributionInfoFor(EnumSet<DistributionInfoDTO.InfoPart>, UUID, boolean, boolean, Set<MarkerType>, Set<NamedAreaLevel>, Map<PresenceAbsenceTerm, Color>, List<Language>, List<String>, CondensedDistributionRecipe, DistributionOrder) - Method in interface eu.etaxonomy.cdm.ext.geo.IEditGeoService
 
compression - Variable in class eu.etaxonomy.cdm.remote.dto.oaipmh.Identify
 
computeBasionymAuthorNomenclaturalTitle() - Method in interface eu.etaxonomy.cdm.model.name.INonViralName
Shortcut.
computeBasionymAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Shortcut.
computeCombinationAuthorNomenclaturalTitle() - Method in interface eu.etaxonomy.cdm.model.name.INonViralName
Shortcut.
computeCombinationAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Shortcut.
COMPUTED() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
computeExBasionymAuthorNomenclaturalTitle() - Method in interface eu.etaxonomy.cdm.model.name.INonViralName
Shortcut.
computeExBasionymAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Shortcut.
computeExCombinationAuthorNomenclaturalTitle() - Method in interface eu.etaxonomy.cdm.model.name.INonViralName
Shortcut.
computeExCombinationAuthorNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.name.TaxonName
Shortcut.
concat(CharSequence, String...) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
Concatenates an array of strings using the defined separator.
Null values are interpreted as empty strings.
If all strings are null then null is returned.
concat(CharSequence, String, String) - Static method in class eu.etaxonomy.cdm.common.CdmUtils
Concatenates two strings, using the defined seperator.
Null values are interpreted as empty Strings.
If both strings are null then null is returned.
ConcatenatingReader<TYPE> - Class in eu.etaxonomy.cdm.io.stream
 
ConcatenatingReader() - Constructor for class eu.etaxonomy.cdm.io.stream.ConcatenatingReader
 
ConcatenatingReader(IReader<TYPE>) - Constructor for class eu.etaxonomy.cdm.io.stream.ConcatenatingReader
 
concatString(Team, List<Person>, int) - Static method in class eu.etaxonomy.cdm.strategy.cache.agent.TeamDefaultCacheStrategy
 
Concept - Class in eu.etaxonomy.cdm.remote.dto.tdwg
 
Concept() - Constructor for class eu.etaxonomy.cdm.remote.dto.tdwg.Concept
 
conceptReference(Reference) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.taxonGraph.AbstractHibernateTaxonGraphProcessor
 
ConcurrentQueue<T> - Class in eu.etaxonomy.cdm.common.concurrent
Concurrent queue.
ConcurrentQueue(int) - Constructor for class eu.etaxonomy.cdm.common.concurrent.ConcurrentQueue
 
CondensedDistribution - Class in eu.etaxonomy.cdm.api.service.dto
 
CondensedDistribution() - Constructor for class eu.etaxonomy.cdm.api.service.dto.CondensedDistribution
 
CondensedDistribution.DistributionItem - Class in eu.etaxonomy.cdm.api.service.dto
 
CondensedDistributionComposerBase - Class in eu.etaxonomy.cdm.ext.geo
Base class for Distribution Composers
CondensedDistributionComposerBase() - Constructor for class eu.etaxonomy.cdm.ext.geo.CondensedDistributionComposerBase
 
CondensedDistributionComposerBase.AreaNode - Class in eu.etaxonomy.cdm.ext.geo
 
CondensedDistributionRecipe - Enum in eu.etaxonomy.cdm.ext.geo
 
config - Variable in class eu.etaxonomy.cdm.io.common.IoStateBase
 
config - Variable in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoRecordBase
 
config - Variable in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
config - Variable in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
config - Variable in class eu.etaxonomy.cdm.io.stream.PartitionableConverterBase
 
ConfigFileUtil - Class in eu.etaxonomy.cdm.config
Utility class for consistent access to and creation of per instance application configuration files.
ConfigFileUtil() - Constructor for class eu.etaxonomy.cdm.config.ConfigFileUtil
 
configuration - Variable in class eu.etaxonomy.cdm.api.application.CdmApplicationController
 
Configuration - Class in eu.etaxonomy.cdm.config
 
Configuration() - Constructor for class eu.etaxonomy.cdm.config.Configuration
 
configurationUi(HttpServletResponse) - Method in class eu.etaxonomy.cdm.remote.staticSwagger.StaticSwaggerApiDoc
 
configure(Type, Properties, ServiceRegistry) - Method in class eu.etaxonomy.cdm.persistence.hibernate.TableGenerator
configure(HttpSecurity) - Method in class eu.etaxonomy.cdm.remote.config.MultiWebSecurityConfiguration.DefaultWebSecurityConfigurationAdapter
 
configure(HttpSecurity) - Method in class eu.etaxonomy.cdm.remote.config.MultiWebSecurityConfiguration.LoginWebSecurityConfigurationAdapter
 
configure(HttpSecurity) - Method in class eu.etaxonomy.cdm.remote.config.MultiWebSecurityConfiguration.RemotingWebSecurityConfigurationAdapter
 
configure(ClientDetailsServiceConfigurer) - Method in class eu.etaxonomy.cdm.remote.config.OAuth2ServerConfiguration.AuthorizationServerConfiguration
 
configure(AuthorizationServerEndpointsConfigurer) - Method in class eu.etaxonomy.cdm.remote.config.OAuth2ServerConfiguration.AuthorizationServerConfiguration
 
configure(ResourceServerSecurityConfigurer) - Method in class eu.etaxonomy.cdm.remote.config.OAuth2ServerConfiguration.ResourceServerConfiguration
 
configure(HttpSecurity) - Method in class eu.etaxonomy.cdm.remote.config.OAuth2ServerConfiguration.ResourceServerConfiguration
 
configureAuthorityServiceDef(String) - Method in class eu.etaxonomy.cdm.api.service.lsid.impl.LsidWsdlWrapperImpl
 
configureContentNegotiation(ContentNegotiationConfigurer) - Method in class eu.etaxonomy.cdm.remote.config.CdmSpringMVCConfig
 
configureDataServiceDef(String) - Method in class eu.etaxonomy.cdm.api.service.lsid.impl.LsidWsdlWrapperImpl
 
configureDefaultServletHandling(DefaultServletHandlerConfigurer) - Method in class eu.etaxonomy.cdm.remote.config.CdmSpringMVCConfig
 
configureGlobal(AuthenticationManagerBuilder, DaoAuthenticationProvider) - Method in class eu.etaxonomy.cdm.remote.config.MultiWebSecurityConfiguration
 
CONFUSUM() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "confusum".
CONGODEMOCRATICREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CONGOPEOPLESREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CONGRUENT_OR_EXCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDED_OR_INCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDES_OR_EXCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_INCLUDES_OR_OVERLAPS() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_OVERLAPS() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_OR_OVERLAPS_OR_EXCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
 
CONGRUENT_TO() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is congruent to".
CONITNENT - Static variable in class eu.etaxonomy.cdm.ext.occurrence.gbif.GbifJsonOccurrenceParser
 
connectToDatabase(DatabaseTypeEnum, String, String, String, String, int, String, H2Mode) - Method in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
connectToDatabase(DatabaseTypeEnum, String, String, String, String) - Method in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
connectToDatabase(DatabaseTypeEnum, String, String, String, String, int, String, H2Mode) - Method in interface eu.etaxonomy.cdm.api.service.IDatabaseService
Connect to the database with the given parameters
connectToDatabase(DatabaseTypeEnum, String, String, String, String) - Method in interface eu.etaxonomy.cdm.api.service.IDatabaseService
Connect to the database with the given parameters.
connectToDatasource(CdmPersistentDataSource) - Method in class eu.etaxonomy.cdm.api.service.DatabaseServiceHibernateImpl
 
connectToDatasource(CdmPersistentDataSource) - Method in interface eu.etaxonomy.cdm.api.service.IDatabaseService
Connect to the database with the given parameters.
CONSERVATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
Returns the "conservation" feature.
CONSERVED() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "conserved".
CONSERVED_AGAINST() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "conserved against" name relationship type.
CONSERVED_DESIG() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "designated to be conserved".
CONSERVED_PROP() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "proposed to be conserved".
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.dc.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.dc.ListRecordsView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.dwc.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListRecordsView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.rdf.GetRecordView
 
constructMetadata(Metadata, IdentifiableEntity) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.rdf.ListRecordsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ExceptionView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.GetRecordView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.IdentifyView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListIdentifiersView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListMetadataFormatsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListRecordsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.oaipmh.ListSetsView
 
constructResponse(OAIPMH, Map<String, Object>) - Method in class eu.etaxonomy.cdm.remote.view.OaiPmhResponseView
 
Contact - Class in eu.etaxonomy.cdm.model.agent
The class for information on how to approach a person or an institution.
Contact() - Constructor for class eu.etaxonomy.cdm.model.agent.Contact
Class constructor.
contains(UUID, String, Object) - Method in class eu.etaxonomy.cdm.api.service.CommonServiceImpl
 
contains(UUID) - Method in class eu.etaxonomy.cdm.api.service.dto.IncludedTaxaDTO
 
contains(UUID, String, Object) - Method in interface eu.etaxonomy.cdm.api.service.ICommonService
Checks whether an object is contained within a persistent collection.
contains(Object, Object) - Method in class eu.etaxonomy.cdm.model.common.PersistentMultiLanguageTextType
 
contains(NamedAreaLevel) - Method in class eu.etaxonomy.cdm.model.location.NamedArea.NamedAreaNode
 
contains(UUID, String, Object) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao
Checks whether an object is contained within a persistent collection.
contains(UUID, String, Object) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl
 
containsChild(TreeNode<T, S>) - Method in class eu.etaxonomy.cdm.common.TreeNode
 
containsDistinctLetters(String) - Method in class eu.etaxonomy.cdm.io.taxonx2013.TaxonXExtractor
 
containsHomotypicalGroupFromStore(UUID) - Method in class eu.etaxonomy.cdm.io.cdmLight.CdmLightExportState
 
containsId(Object) - Method in class eu.etaxonomy.cdm.io.common.MapWrapper
 
containsKey(UUID, String, Object) - Method in class eu.etaxonomy.cdm.api.service.CommonServiceImpl
 
containsKey(UUID, String, Object) - Method in interface eu.etaxonomy.cdm.api.service.ICommonService
Checks whether an index object exists within a persistent collection (usually a map)
containsKey(Language) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
containsKey(Map<T, EnumeratedTermVoc<T>.SingleEnumTerm<T>>, String) - Method in class eu.etaxonomy.cdm.model.term.EnumeratedTermVoc
 
containsKey(UUID, String, Object) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao
Checks whether an index object exists within a persistent collection (usually a map)
containsKey(UUID, String, Object) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl
 
containsKey(Object) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
containsUuid(Map<T, EnumeratedTermVoc<T>.SingleEnumTerm<T>>, UUID) - Method in class eu.etaxonomy.cdm.model.term.EnumeratedTermVoc
 
containsValue(UUID, String, Object) - Method in class eu.etaxonomy.cdm.api.service.CommonServiceImpl
 
containsValue(UUID, String, Object) - Method in interface eu.etaxonomy.cdm.api.service.ICommonService
checks whether an value object exists within a persistent collection (usually a map)
containsValue(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
containsValue(UUID, String, Object) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.ICdmGenericDao
checks whether an value object exists within a persistent collection (usually a map)
containsValue(UUID, String, Object) - Method in class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmGenericDaoImpl
 
containsValue(Object) - Method in class eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap
 
content - Variable in class eu.etaxonomy.cdm.jaxb.FormattedText
 
contentNegotiatingViewResolver(ContentNegotiationManager) - Method in class eu.etaxonomy.cdm.remote.config.CdmSpringMVCConfig
Create the CNVR.
CONTEXT_CLASSES - Static variable in class eu.etaxonomy.cdm.io.jaxb.CdmDocumentBuilder
 
ContigFile(DerivateDataDTO.Link) - Constructor for class eu.etaxonomy.cdm.api.service.dto.DerivateDataDTO.ContigFile
 
continent - Variable in class eu.etaxonomy.cdm.io.specimen.gbif.in.GbifDataHolder
 
continent - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
CONTINUED - Static variable in class eu.etaxonomy.cdm.model.common.TimePeriod
 
CONTRADICTION() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is impossible" (contradiction).
ControllerUtils - Class in eu.etaxonomy.cdm.remote.controller.util
 
ControllerUtils() - Constructor for class eu.etaxonomy.cdm.remote.controller.util.ControllerUtils
 
CONVAR() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
ConversationHolder - Class in eu.etaxonomy.cdm.api.conversation
This is an implementation of the session-per-conversation pattern for usage in a Spring context.
ConversationHolder() - Constructor for class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Simple constructor used by Spring only
ConversationHolder(DataSource, SessionFactory, PlatformTransactionManager) - Constructor for class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Create a new Conversation holder and bind it immediately.
ConversationHolder(DataSource, SessionFactory, PlatformTransactionManager, boolean) - Constructor for class eu.etaxonomy.cdm.api.conversation.ConversationHolder
Create a new Conversation holder and optionally bind it immediately.
ConversationHolderMock - Class in eu.etaxonomy.cdm.api.conversation
 
ConversationHolderMock() - Constructor for class eu.etaxonomy.cdm.api.conversation.ConversationHolderMock
 
conversionComments - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
ConversionResults() - Constructor for class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
conversionSuccessful - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
convert(String) - Method in class eu.etaxonomy.cdm.remote.converter.RestrictionConverter
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.DateTimeConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.DefaultRelatedPageConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.HibernateProxyNullSafeDeepConverter
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.IdentifierConverter
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.LsidConverter
 
convert(Object, Object, Class, Class) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.LsidProxyConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.PreferLsidToUriConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.StripTagsConverter
 
convert(Object, Object, Class<?>, Class<?>) - Method in class eu.etaxonomy.cdm.remote.dto.assembler.converter.TimePeriodConverter
 
convertAptToHtml(File) - Static method in class eu.etaxonomy.cdm.common.DocUtils
Converts an apt file into html.
convertAptToHtml(InputStream) - Static method in class eu.etaxonomy.cdm.common.DocUtils
Converts an apt input stream into html.
convertedCoord - Variable in class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter.ConversionResults
 
ConvertMergeStrategy - Class in eu.etaxonomy.cdm.strategy.merge
 
ConvertMergeStrategy(Class<? extends CdmBase>) - Constructor for class eu.etaxonomy.cdm.strategy.merge.ConvertMergeStrategy
 
convertPerson2Team(UUID) - Method in class eu.etaxonomy.cdm.api.service.AgentServiceImpl
 
convertPerson2Team(Person) - Method in class eu.etaxonomy.cdm.api.service.AgentServiceImpl
 
convertPerson2Team(UUID) - Method in interface eu.etaxonomy.cdm.api.service.IAgentService
 
convertPerson2Team(Person) - Method in interface eu.etaxonomy.cdm.api.service.IAgentService
If possible replaces the given person by a new Team.
convertTeam2Person(UUID) - Method in class eu.etaxonomy.cdm.api.service.AgentServiceImpl
 
convertTeam2Person(Team) - Method in class eu.etaxonomy.cdm.api.service.AgentServiceImpl
 
convertTeam2Person(UUID) - Method in interface eu.etaxonomy.cdm.api.service.IAgentService
 
convertTeam2Person(Team) - Method in interface eu.etaxonomy.cdm.api.service.IAgentService
If the given Team is a single member team all links to the team are redirected to the single member and the team itself is deleted.
convertTo(Class<TARGET>, SpecimenOrObservationType) - Method in class eu.etaxonomy.cdm.api.utility.DerivedUnitConverter
converts the source DerivedUnit this converter has been created for into a DerivedUnit of the type TARGET.
convertToDTOPager(Pager<Registration>) - Method in interface eu.etaxonomy.cdm.api.service.registration.IRegistrationWorkingSetService
 
convertToDTOPager(Pager<Registration>) - Method in class eu.etaxonomy.cdm.api.service.registration.RegistrationWorkingSetService
 
convertToWikiTitle(String) - Method in class eu.etaxonomy.cdm.print.out.mediawiki.WikiBot
Convert a title in wiki title format
COOKISLANDS() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
CoordinateConverter - Class in eu.etaxonomy.cdm.strategy.parser.location
 
CoordinateConverter() - Constructor for class eu.etaxonomy.cdm.strategy.parser.location.CoordinateConverter
 
CoordinateConverter.ConversionResults - Class in eu.etaxonomy.cdm.strategy.parser.location
 
CoordinateConverter.CustomPatternIn - Class in eu.etaxonomy.cdm.strategy.parser.location
 
coordinatePrecision - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
COORDINATES - Static variable in class eu.etaxonomy.cdm.io.markup.MarkupImportBase
 
coordinateUncertaintyInMeters - Variable in class eu.etaxonomy.cdm.remote.dto.dwc.SimpleDarwinRecord
 
COPTIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
copy(File, File, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
Copies a File to another directory
copy(InputStream, File, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
copy(InputStream, OutputStream) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
copy(String, String, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
copy(String, String) - Static method in class eu.etaxonomy.cdm.common.FileCopy
 
copyClassPathResource(URL, String) - Method in class eu.etaxonomy.cdm.test.unitils.CleanSweepInsertLoadStrategy
more or less 1:1 copy from FileUtils.copyClassPathResource(String, String)
copyCloned(TimePeriod, TimePeriod) - Static method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
COPYRIGHT() - Static method in class eu.etaxonomy.cdm.model.media.RightsType
 
core - Variable in class eu.etaxonomy.cdm.io.dwca.jaxb.Archive
 
Core - Class in eu.etaxonomy.cdm.io.dwca.jaxb
Java class for anonymous complex type.
Core() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.Core
 
Coreid - Class in eu.etaxonomy.cdm.io.dwca.jaxb
Java class for anonymous complex type.
Coreid() - Constructor for class eu.etaxonomy.cdm.io.dwca.jaxb.Coreid
 
coreid - Variable in class eu.etaxonomy.cdm.io.dwca.jaxb.Extension
 
CORNISH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CorrectEpithetsForRank - Annotation Type in eu.etaxonomy.cdm.validation.annotation
 
CorrectEpithetsForRankValidator - Class in eu.etaxonomy.cdm.validation.constraint
 
CorrectEpithetsForRankValidator() - Constructor for class eu.etaxonomy.cdm.validation.constraint.CorrectEpithetsForRankValidator
 
correctYearPhrase - Static variable in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImplRegExBase
 
CORSICAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
COSTARICAREPUBLICOF() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
COTEDIVOIREIVORYCOASTREPUBLICOFTHE() - Static method in class eu.etaxonomy.cdm.model.location.Country
 
count(Person, MarkerType) - Method in class eu.etaxonomy.cdm.api.service.AnnotationService
 
count(User, MarkerType) - Method in class eu.etaxonomy.cdm.api.service.AnnotationService
 
count(Class<S>) - Method in class eu.etaxonomy.cdm.api.service.CommonServiceImpl
 
count(Class<? extends DescriptionBase>, Boolean, Boolean, Set<Feature>) - Method in class eu.etaxonomy.cdm.api.service.DescriptionServiceImpl
 
count(Person, MarkerType) - Method in interface eu.etaxonomy.cdm.api.service.IAnnotationService
return a count of the number of annotations made by this person, optionally filtered by the status of those annotations
count(User, MarkerType) - Method in interface eu.etaxonomy.cdm.api.service.IAnnotationService
return a count of the number of annotations created by this user, optionally filtered by the status of those annotations
count(Class<S>) - Method in interface eu.etaxonomy.cdm.api.service.ICommonService
Returns the number of objects that belong to a certain class.
count(Class<? extends DescriptionBase>, Boolean, Boolean, Set<Feature>) - Method in interface eu.etaxonomy.cdm.api.service.IDescriptionService
Count the descriptions of type , filtered using the following parameters
count(User, MarkerType) - Method in interface eu.etaxonomy.cdm.api.service.IMarkerService
 
count() - Method in interface eu.etaxonomy.cdm.api.service.IPreferenceService
Return the number of all existing cdm preferences
count(Class<? extends T>) - Method in interface eu.etaxonomy.cdm.api.service.IService
Returns a count of all entities of type optionally restricted to objects belonging to a class that that extends
count(TaxonNodeFilter) - Method in interface eu.etaxonomy.cdm.api.service.ITaxonNodeService
Returns a list of taxon node uuids according to the given filter.
count(User, MarkerType) - Method in class eu.etaxonomy.cdm.api.service.MarkerServiceImpl
 
count - Variable in class eu.etaxonomy.cdm.api.service.pager.impl.AbstractPagerImpl
 
count() - Method in class eu.etaxonomy.cdm.api.service.PreferenceServiceImpl
 
count(Class<? extends T>) - Method in class eu.etaxonomy.cdm.api.service.ServiceBase
 
count(TaxonNodeFilter) - Method in class eu.etaxonomy.cdm.api.service.TaxonNodeServiceImpl
 
count - Variable in class eu.etaxonomy.cdm.io.csv.redlist.demo.CsvDemoRecordBase
 
count - Variable in class eu.etaxonomy.cdm.io.csv.redlist.out.CsvRecordBaseRedlist
 
count - Variable in class eu.etaxonomy.cdm.io.dwca.out.DwcaRecordBase
 
count(Person, MarkerType) - Method in interface eu.etaxonomy.cdm.persistence.dao.common.IAnnotationDao
Returns a count of Annotations, optionally filtered by commentator and status