Modifier and Type | Method and Description |
---|---|
TaxonDescription |
DescriptiveDataSetService.findDefaultDescription(java.util.UUID specimenDescriptionUuid,
java.util.UUID dataSetUuid) |
TaxonDescription |
IDescriptiveDataSetService.findDefaultDescription(java.util.UUID specimenDescriptionUuid,
java.util.UUID dataSetUuid)
Returns the first
TaxonDescription with DescriptionType.DEFAULT_VALUES_FOR_AGGREGATION
found in the taxon node hierarchy of the associated taxon |
TaxonDescription |
DescriptiveDataSetService.findTaxonDescriptionByDescriptionType(java.util.UUID dataSetUuid,
java.util.UUID taxonNodeUuid,
DescriptionType descriptionType) |
TaxonDescription |
IDescriptiveDataSetService.findTaxonDescriptionByDescriptionType(java.util.UUID dataSetUuid,
java.util.UUID taxonNodeUuid,
DescriptionType descriptionType)
Returns a
TaxonDescription for a given taxon node with corresponding
features according to the DescriptiveDataSet and the having the given DescriptionType . |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonDescription> |
IDescriptionService.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionServiceImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
IDescriptionService.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionServiceImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonDescription> |
IDescriptionService.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
Pager<TaxonDescription> |
DescriptionServiceImpl.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonDescription> |
IDescriptionService.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
Pager<TaxonDescription> |
DescriptionServiceImpl.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonDescription> |
IDescriptionService.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
Pager<TaxonDescription> |
DescriptionServiceImpl.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
FIXME Candidate for harmonization
Rename: searchByDistribution
|
Modifier and Type | Method and Description |
---|---|
java.util.List<TextData> |
INaturalLanguageGenerator.generateNaturalLanguageDescription(TermTree featureTree,
TaxonDescription descriptions) |
java.util.List<TextData> |
NaturalLanguageGenerator.generateNaturalLanguageDescription(TermTree featureTree,
TaxonDescription description)
The most simple function to generate a description.
|
java.util.List<TextData> |
INaturalLanguageGenerator.generateNaturalLanguageDescription(TermTree featureTree,
TaxonDescription description,
Language language) |
java.util.List<TextData> |
NaturalLanguageGenerator.generateNaturalLanguageDescription(TermTree featureTree,
TaxonDescription description,
Language language)
Generate a description in a specified language.
|
java.lang.String |
IDescriptionService.generateNaturalLanguageDescription(TermTree featureTree,
TaxonDescription description,
java.util.List<Language> preferredLanguages,
java.lang.String separator)
Generate a string representation of the structured
description supplied in natural language
The featureTree will be used to structure the NaturalLanguageDescription. |
java.lang.String |
DescriptionServiceImpl.generateNaturalLanguageDescription(TermTree featureTree,
TaxonDescription description,
java.util.List<Language> preferredLanguages,
java.lang.String separator) |
java.util.List<TextData> |
INaturalLanguageGenerator.generatePreferredNaturalLanguageDescription(TermTree featureTree,
TaxonDescription description,
java.util.List<Language> languages) |
java.util.List<TextData> |
NaturalLanguageGenerator.generatePreferredNaturalLanguageDescription(TermTree featureTree,
TaxonDescription description,
java.util.List<Language> languages)
Generate a description with a specified list of preferred languages.
|
TextData |
INaturalLanguageGenerator.generatePreferredSingleTextData(TermTree featureTree,
TaxonDescription description,
java.util.List<Language> languages) |
TextData |
NaturalLanguageGenerator.generatePreferredSingleTextData(TermTree featureTree,
TaxonDescription description,
java.util.List<Language> languages)
Generate a description with a specified list of preferred languages.
|
TextData |
INaturalLanguageGenerator.generateSingleTextData(TermTree featureTree,
TaxonDescription description) |
TextData |
NaturalLanguageGenerator.generateSingleTextData(TermTree featureTree,
TaxonDescription description)
Generate a description as a single paragraph in a TextData.
|
TextData |
INaturalLanguageGenerator.generateSingleTextData(TermTree featureTree,
TaxonDescription description,
Language language) |
TextData |
NaturalLanguageGenerator.generateSingleTextData(TermTree featureTree,
TaxonDescription description,
Language language)
Generate a description as a single paragraph in a TextData.
|
Modifier and Type | Method and Description |
---|---|
DistributionTree |
IDescriptionService.getOrderedDistributions(java.util.Set<TaxonDescription> taxonDescriptions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Set<NamedAreaLevel> omitLevels,
java.util.List<java.lang.String> propertyPaths)
Deprecated.
use
IEditGeoService#composeDistributionInfoFor() instead |
DistributionTree |
DescriptionServiceImpl.getOrderedDistributions(java.util.Set<TaxonDescription> taxonDescriptions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hiddenAreaMarkerTypes,
java.util.Set<NamedAreaLevel> omitLevels,
java.util.List<java.lang.String> propertyPaths)
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
protected abstract TaxonDescription |
DescriptionAggregationBase.createNewDescription(Taxon taxon) |
protected TaxonDescription |
DistributionAggregation.createNewDescription(Taxon taxon) |
protected TaxonDescription |
StructuredDescriptionAggregation.createNewDescription(Taxon taxon) |
Modifier and Type | Method and Description |
---|---|
protected abstract void |
DescriptionAggregationBase.addAggregationResultToDescription(TaxonDescription targetDescription,
DescriptionAggregationBase.ResultHolder resultHolder) |
protected void |
DistributionAggregation.addAggregationResultToDescription(TaxonDescription targetDescription,
DescriptionAggregationBase.ResultHolder resultHolder) |
protected void |
StructuredDescriptionAggregation.addAggregationResultToDescription(TaxonDescription targetDescription,
DescriptionAggregationBase.ResultHolder resultHolder) |
protected abstract boolean |
DescriptionAggregationBase.hasDescriptionType(TaxonDescription description) |
protected boolean |
DistributionAggregation.hasDescriptionType(TaxonDescription description) |
protected boolean |
StructuredDescriptionAggregation.hasDescriptionType(TaxonDescription description) |
protected void |
DescriptionAggregationBase.removeDescriptionIfEmpty(TaxonDescription description) |
protected void |
StructuredDescriptionAggregation.removeDescriptionIfEmpty(TaxonDescription description) |
protected abstract void |
DescriptionAggregationBase.setDescriptionTitle(TaxonDescription description,
Taxon taxon) |
protected void |
DistributionAggregation.setDescriptionTitle(TaxonDescription description,
Taxon taxon) |
protected void |
StructuredDescriptionAggregation.setDescriptionTitle(TaxonDescription description,
Taxon taxon) |
Modifier and Type | Method and Description |
---|---|
protected abstract void |
DescriptionAggregationBase.aggregateToParentTaxon(TaxonNode taxonNode,
DescriptionAggregationBase.ResultHolder resultHolder,
java.util.Set<TaxonDescription> excludedDescriptions) |
protected void |
DistributionAggregation.aggregateToParentTaxon(TaxonNode taxonNode,
DescriptionAggregationBase.ResultHolder resultHolder,
java.util.Set<TaxonDescription> excludedDescriptions) |
protected void |
StructuredDescriptionAggregation.aggregateToParentTaxon(TaxonNode taxonNode,
DescriptionAggregationBase.ResultHolder resultHolder,
java.util.Set<TaxonDescription> excludedDescriptions) |
protected abstract void |
DescriptionAggregationBase.aggregateWithinSingleTaxon(Taxon taxon,
DescriptionAggregationBase.ResultHolder resultHolder,
java.util.Set<TaxonDescription> excludedDescriptions) |
protected void |
DistributionAggregation.aggregateWithinSingleTaxon(Taxon taxon,
DescriptionAggregationBase.ResultHolder resultHolder,
java.util.Set<TaxonDescription> excludedDescriptions) |
protected void |
StructuredDescriptionAggregation.aggregateWithinSingleTaxon(Taxon taxon,
DescriptionAggregationBase.ResultHolder resultHolder,
java.util.Set<TaxonDescription> excludedDescriptions) |
Modifier and Type | Method and Description |
---|---|
java.util.Set<TaxonDescription> |
TaxonDescriptionDTO.getDescriptions() |
Modifier and Type | Method and Description |
---|---|
void |
TaxonDescriptionDTO.setDescriptions(java.util.Set<TaxonDescription> descriptions) |
Constructor and Description |
---|
TaxonRowWrapperDTO(TaxonDescription description,
TaxonNodeDto taxonNode) |
Modifier and Type | Method and Description |
---|---|
static java.util.Set<ImageFile> |
ImagesUtility.getImages(TaxonDescription description)
Deprecated.
not used by EDITor anymore
|
Modifier and Type | Method and Description |
---|---|
java.lang.String |
EditGeoService.getDistributionServiceRequestParameterString(TaxonDescription taxonDescription,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs)
Deprecated.
|
java.lang.String |
IEditGeoService.getDistributionServiceRequestParameterString(TaxonDescription description,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs)
Deprecated.
use
#getDistributionServiceRequestParameterString(List, Map, int, int, String, String, List) instead |
Modifier and Type | Method and Description |
---|---|
CondensedDistribution |
EditGeoService.getCondensedDistribution(java.util.List<TaxonDescription> taxonDescriptions,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
MarkerType fallbackAreaMarkerType,
CondensedDistributionRecipe recipe,
java.util.List<Language> langs) |
java.lang.String |
EditGeoService.getDistributionServiceRequestParameterString(java.util.List<TaxonDescription> taxonDescriptions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs) |
java.lang.String |
IEditGeoService.getDistributionServiceRequestParameterString(java.util.List<TaxonDescription> taxonDescriptions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs)
Retrieve a parameter string to pass to an EditGeoService endpoint
The endpoint will deliver a a map generated by the Edit Geo Service for the given
TaxonDescription |
Modifier and Type | Method and Description |
---|---|
protected <T extends TaxonDescription> |
Cdm2CdmImportBase.handlePersistedTaxonDescription(TaxonDescription taxDescription) |
protected <T extends TaxonDescription> |
Cdm2CdmImportBase.handlePersistedTaxonNameDescription(TaxonNameDescription nameDescription) |
Modifier and Type | Method and Description |
---|---|
protected <T extends TaxonDescription> |
Cdm2CdmImportBase.handlePersistedTaxonDescription(TaxonDescription taxDescription) |
Modifier and Type | Method and Description |
---|---|
TaxonDescription |
CdmImportBase.getDefaultTaxonDescription(Taxon taxon,
boolean isImageGallery,
boolean createNewIfNotExists,
Reference source)
Returns the default taxon description.
|
TaxonDescription |
CdmImportBase.getMarkedTaxonDescription(Taxon taxon,
MarkerType markerType,
boolean isImageGallery,
boolean createNewIfNotExists,
Reference source,
java.lang.String title)
Returns the taxon description with marked as
true with the given marker type. |
TaxonDescription |
CdmImportBase.getTaxonDescription(Taxon taxon,
boolean isImageGallery,
boolean createNewIfNotExists)
Returns the taxon description for a taxon.
|
TaxonDescription |
CdmImportBase.getTaxonDescription(Taxon taxon,
Reference ref,
boolean isImageGallery,
boolean createNewIfNotExists)
Like
CdmImportBase.getTaxonDescription(Taxon, boolean, boolean)
Only matches a description if the given reference is a source of the description.If a new description is created the given reference will be added as a source. |
Modifier and Type | Method and Description |
---|---|
protected TaxonDescription |
DbImportDescriptionElementCreationMapperBase.getTaxonDescription(Taxon taxon,
boolean isImageGallery) |
Modifier and Type | Method and Description |
---|---|
protected TaxonDescription |
MarkupImportBase.getDefaultTaxonDescription(Taxon taxon,
boolean isImageGallery,
boolean createNewIfNotExists,
Reference source) |
protected TaxonDescription |
MarkupImportBase.getExtractedMarkupMarkedDescription(MarkupImportState state,
Taxon taxon,
Reference sourceReference) |
protected TaxonDescription |
MarkupImportBase.getMarkedTaxonDescription(Taxon taxon,
MarkerType markerType,
boolean isImageGallery,
boolean createNewIfNotExists,
Reference source,
java.lang.String title)
Returns the taxon description with marked as
true with the given marker type. |
protected TaxonDescription |
MarkupImportBase.getTaxonDescription(Taxon taxon,
Reference ref,
boolean isImageGallery,
boolean createNewIfNotExists) |
Modifier and Type | Method and Description |
---|---|
java.util.List<DescriptionElementBase> |
MarkupSpecimenImport.handleMaterialsExamined(MarkupImportState state,
javax.xml.stream.XMLEventReader reader,
javax.xml.stream.events.XMLEvent parentEvent,
Feature feature,
TaxonDescription defaultDescription) |
DescriptionElementBase |
MarkupFeatureImport.makeFeatureFigureRef(MarkupImportState state,
javax.xml.stream.XMLEventReader reader,
TaxonDescription taxonDescription,
boolean isDescription,
DescriptionElementBase lastDescriptionElement,
Reference sourceReference,
javax.xml.stream.events.XMLEvent next) |
Modifier and Type | Method and Description |
---|---|
void |
SDDDocumentBuilder.buildScope(org.apache.xerces.dom.ElementImpl element,
TaxonDescription taxonDescription)
Builds Scope associated with a CodedDescription
|
void |
SDDDocumentBuilder.buildSummaryData(org.apache.xerces.dom.ElementImpl element,
TaxonDescription taxonDescription)
Builds SummaryData associated with a CodedDescription
|
Modifier and Type | Method and Description |
---|---|
TaxonDescription |
SpecimenUserInteraction.askForDescriptionGroup(java.util.Set<TaxonDescription> descriptions) |
TaxonDescription |
SpecimenImportStateBase.getDescriptionPerTaxon(java.util.UUID taxonUUID) |
Modifier and Type | Method and Description |
---|---|
void |
SpecimenImportStateBase.setDescriptionGroup(TaxonDescription description) |
Modifier and Type | Method and Description |
---|---|
TaxonDescription |
SpecimenUserInteraction.askForDescriptionGroup(java.util.Set<TaxonDescription> descriptions) |
Modifier and Type | Method and Description |
---|---|
void |
GbifImportState.setDescriptionGroup(TaxonDescription descriptionGroup) |
Modifier and Type | Method and Description |
---|---|
protected TaxonDescription |
PartitionableConverterBase.getTaxonDescription(Taxon taxon,
boolean isImageGallery) |
Modifier and Type | Method and Description |
---|---|
protected void |
TaxonXAddSources.addAndSaveSource(Reference refMods,
TaxonDescription taxonDescription,
Reference currentRef) |
void |
TaxonXAddSources.addSource(Reference refMods,
TaxonDescription taxonDescription) |
Modifier and Type | Method and Description |
---|---|
static TaxonDescription |
TaxonDescription.NewInstance()
Creates a new empty taxon description instance.
|
static TaxonDescription |
TaxonDescription.NewInstance(Taxon taxon)
Creates a new taxon description instance for the given
taxon . |
static TaxonDescription |
TaxonDescription.NewInstance(Taxon taxon,
boolean isImageGallery)
Creates a new taxon description instance for the given
taxon . |
Modifier and Type | Method and Description |
---|---|
TaxonDescription |
Taxon.getImageGallery(boolean createNewIfNotExists)
Returns the image gallery for a taxon.
|
TaxonDescription |
Taxon.getOrCreateImageGallery(java.lang.String title)
Returns the image gallery description.
|
TaxonDescription |
Taxon.getOrCreateImageGallery(java.lang.String title,
boolean addImageGalleryToTitle,
boolean onlyTitle)
Returns the image gallery description.
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<TaxonDescription> |
Taxon.getDescriptions()
Returns the set of
taxon descriptions
concerning this taxon. |
java.util.Set<TaxonDescription> |
Taxon.getDescriptions(DescriptionType type) |
Modifier and Type | Method and Description |
---|---|
void |
Taxon.addDescription(TaxonDescription description)
Adds a new
taxon description to the set
of taxon descriptions assigned to this (accepted/correct) taxon. |
void |
Taxon.removeDescription(TaxonDescription description)
Removes one element from the set of
taxon descriptions assigned
to this (accepted/correct) taxon. |
void |
Taxon.removeDescription(TaxonDescription description,
boolean removeElements) |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonDescription> |
IDescriptionDao.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
java.util.List<TaxonDescription> |
IDescriptionDao.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonDescription> |
DescriptionDaoImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScopes,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionDaoImpl.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm status,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
Pager<TaxonDescription> |
TaxonController.doGetDescriptions(java.util.UUID uuid,
java.util.List<MarkerType> markerTypes,
java.util.List<DescriptionType> descriptionTypes,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
|
Modifier and Type | Method and Description |
---|---|
protected IdentifiableEntity |
TaxonDescriptionDefaultCacheStrategy.getDescriptionEntity(TaxonDescription description) |
java.lang.String |
TaxonDescriptionDefaultCacheStrategy.getTitleCache(TaxonDescription taxonDescription) |
Modifier and Type | Method and Description |
---|---|
java.util.Set<TaxonDescription> |
PolytomousKeyGeneratorConfigurator.getTaxonDescriptions() |
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