Package | Description |
---|---|
eu.etaxonomy.cdm.api.service | |
eu.etaxonomy.cdm.api.service.description | |
eu.etaxonomy.cdm.api.service.dto | |
eu.etaxonomy.cdm.ext.geo | |
eu.etaxonomy.cdm.filter | |
eu.etaxonomy.cdm.io.berlinModel | |
eu.etaxonomy.cdm.io.common | |
eu.etaxonomy.cdm.io.common.mapping | |
eu.etaxonomy.cdm.io.common.mapping.out | |
eu.etaxonomy.cdm.io.csv.redlist.demo | |
eu.etaxonomy.cdm.io.csv.redlist.out | |
eu.etaxonomy.cdm.io.dwca.in | |
eu.etaxonomy.cdm.io.dwca.out | |
eu.etaxonomy.cdm.io.markup | |
eu.etaxonomy.cdm.io.stream | |
eu.etaxonomy.cdm.model.description |
Provides classes:
to describe specimens, observations or taxa,
to associate other factual informations to specimens, observations or taxa (including distribution),
to supply additional information about taxon names and
to support identification by means of keys.
Related documentation
UML Diagrams |
eu.etaxonomy.cdm.persistence.dao.description | |
eu.etaxonomy.cdm.persistence.dao.hibernate.description | |
eu.etaxonomy.cdm.remote.controller |
Modifier and Type | Method and Description |
---|---|
OrderedTermVocabulary<PresenceAbsenceTerm> |
ILocationService.getPresenceAbsenceTermVocabulary()
Deprecated.
use TermService#getVocabulary(VocabularyType) instead
|
OrderedTermVocabulary<PresenceAbsenceTerm> |
LocationServiceImpl.getPresenceAbsenceTermVocabulary()
Deprecated.
|
Modifier and Type | Method and Description |
---|---|
Pager<TaxonDescription> |
IDescriptionService.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
Pager<TaxonDescription> |
DescriptionServiceImpl.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
FIXME Candidate for harmonization
Rename: searchByDistribution
|
Modifier and Type | Method and Description |
---|---|
protected org.apache.lucene.search.Query |
TaxonServiceImpl.createByDistributionJoinQuery(java.util.List<NamedArea> namedAreaList,
java.util.List<PresenceAbsenceTerm> distributionStatusList,
QueryFactory queryFactory,
java.lang.Class<? extends CdmBase> toType,
boolean asFilter) |
Pager<SearchResult<TaxonBase>> |
TaxonServiceImpl.findByDistribution(java.util.List<NamedArea> areaFilter,
java.util.List<PresenceAbsenceTerm> statusFilter,
Classification classification,
TaxonNode subtree,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<SearchResult<TaxonBase>> |
ITaxonService.findByDistribution(java.util.List<NamedArea> areaFilter,
java.util.List<PresenceAbsenceTerm> statusFilter,
Classification classification,
TaxonNode subtree,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<SearchResult<TaxonBase>> |
TaxonServiceImpl.findTaxaAndNamesByFullText(java.util.EnumSet<TaxaAndNamesSearchMode> searchModes,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
java.util.Set<NamedArea> namedAreas,
java.util.Set<PresenceAbsenceTerm> distributionStatus,
java.util.List<Language> languages,
boolean highlightFragments,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<SearchResult<TaxonBase>> |
ITaxonService.findTaxaAndNamesByFullText(java.util.EnumSet<TaxaAndNamesSearchMode> searchModes,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
java.util.Set<NamedArea> namedAreas,
java.util.Set<PresenceAbsenceTerm> distributionStatus,
java.util.List<Language> languages,
boolean highlightFragments,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Searches for TaxonBase instances using the TaxonBase free text index.
|
protected LuceneSearch |
TaxonServiceImpl.prepareByDistributionSearch(java.util.List<NamedArea> namedAreaList,
java.util.List<PresenceAbsenceTerm> distributionStatusList,
Classification classification,
TaxonNode subtree)
This method has been primarily created for testing the area join query but might
also be useful in other situations
|
Modifier and Type | Method and Description |
---|---|
java.util.List<PresenceAbsenceTerm> |
DistributionAggregationConfiguration.getByAreaIgnoreStatusList()
byAreaIgnoreStatusList contains by default:
AbsenceTerm.CULTIVATED_REPORTED_IN_ERROR()
AbsenceTerm.INTRODUCED_REPORTED_IN_ERROR()
AbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED()
AbsenceTerm.NATIVE_REPORTED_IN_ERROR()
AbsenceTerm.NATIVE_FORMERLY_NATIVE()
|
java.util.List<PresenceAbsenceTerm> |
DistributionAggregationConfiguration.getByRankIgnoreStatusList()
Ranks to be ignored if aggregated to next higher rank.
|
TermCollection<PresenceAbsenceTerm,TermNode> |
DistributionAggregationConfiguration.getStatusOrder() |
Modifier and Type | Method and Description |
---|---|
static DistributionAggregationConfiguration |
DistributionAggregationConfiguration.NewInstance(java.util.List<AggregationMode> aggregationModes,
java.util.List<java.util.UUID> superAreas,
TaxonNodeFilter filter,
TermTree<PresenceAbsenceTerm> statusOrder,
IProgressMonitor monitor) |
void |
DistributionAggregationConfiguration.setByAreaIgnoreStatusList(java.util.List<PresenceAbsenceTerm> byAreaIgnoreStatusList) |
void |
DistributionAggregationConfiguration.setByRankIgnoreStatusList(java.util.List<PresenceAbsenceTerm> byRankIgnoreStatusList) |
void |
DistributionAggregationConfiguration.setStatusOrder(TermCollection<PresenceAbsenceTerm,TermNode> statusOrder) |
Constructor and Description |
---|
StatusAndSources(PresenceAbsenceTerm status,
DescriptionElementBase deb,
AggregationSourceMode aggregationSourceMode) |
Modifier and Type | Method and Description |
---|---|
PresenceAbsenceTerm |
CondensedDistribution.DistributionItem.getStatus() |
Modifier and Type | Method and Description |
---|---|
void |
CondensedDistribution.addForeignDistributionItem(PresenceAbsenceTerm status,
java.lang.String areaStatusLabel,
java.lang.String sortString) |
void |
CondensedDistribution.addIndigenousDistributionItem(PresenceAbsenceTerm status,
java.lang.String areaStatusLabel,
java.lang.String sortString) |
void |
CondensedDistribution.DistributionItem.setStatus(PresenceAbsenceTerm status) |
Constructor and Description |
---|
DistributionItem(PresenceAbsenceTerm status,
java.lang.String areaStatusLabel,
java.lang.String sortString) |
Modifier and Type | Method and Description |
---|---|
static java.util.Map<PresenceAbsenceTerm,java.awt.Color> |
EditGeoServiceUtilities.buildStatusColorMap(java.lang.String statusColorJson,
ITermService termService,
IVocabularyService vocabularyService) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CondensedDistributionComposerBase.statusSymbol(PresenceAbsenceTerm status) |
Modifier and Type | Method and Description |
---|---|
DistributionInfoDTO |
EditGeoService.composeDistributionInfoFor(java.util.EnumSet<DistributionInfoDTO.InfoPart> parts,
java.util.UUID taxonUUID,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hiddenAreaMarkerTypes,
java.util.Set<NamedAreaLevel> omitLevels,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> languages,
java.util.List<java.lang.String> propertyPaths,
CondensedDistributionRecipe recipe,
DistributionOrder distributionOrder) |
DistributionInfoDTO |
IEditGeoService.composeDistributionInfoFor(java.util.EnumSet<DistributionInfoDTO.InfoPart> parts,
java.util.UUID taxonUUID,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hiddenAreaMarkerTypes,
java.util.Set<NamedAreaLevel> omitLevels,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> languages,
java.util.List<java.lang.String> propertyPaths,
CondensedDistributionRecipe recipe,
DistributionOrder distributionOrder) |
static java.lang.String |
EditGeoServiceUtilities.getDistributionServiceRequestParameterString(java.util.Collection<Distribution> filteredDistributions,
IGeoServiceAreaMapping mapping,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.lang.String projectToLayer,
java.util.List<Language> languages)
Returns the parameter String for the EDIT geo webservice to create a
distribution map.
|
java.lang.String |
EditGeoService.getDistributionServiceRequestParameterString(java.util.List<TaxonDescription> taxonDescriptions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs) |
java.lang.String |
IEditGeoService.getDistributionServiceRequestParameterString(java.util.List<TaxonDescription> taxonDescriptions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs)
Retrieve a parameter string to pass to an EditGeoService endpoint
The endpoint will deliver a a map generated by the Edit Geo Service for the given
TaxonDescription |
java.lang.String |
EditGeoService.getDistributionServiceRequestParameterString(java.util.Set<Distribution> distributions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs) |
java.lang.String |
IEditGeoService.getDistributionServiceRequestParameterString(java.util.Set<Distribution> distributions,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs) |
java.lang.String |
EditGeoService.getDistributionServiceRequestParameterString(TaxonDescription taxonDescription,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs)
Deprecated.
|
java.lang.String |
IEditGeoService.getDistributionServiceRequestParameterString(TaxonDescription description,
boolean subAreaPreference,
boolean statusOrderPreference,
java.util.Set<MarkerType> hideMarkedAreas,
java.util.Map<PresenceAbsenceTerm,java.awt.Color> presenceAbsenceTermColors,
java.util.List<Language> langs)
Deprecated.
use
#getDistributionServiceRequestParameterString(List, Map, int, int, String, String, List) instead |
Modifier and Type | Method and Description |
---|---|
java.util.List<LogicFilter<PresenceAbsenceTerm>> |
TaxonNodeFilter.getDistributionStatusFilter() |
Modifier and Type | Method and Description |
---|---|
static PresenceAbsenceTerm |
BerlinModelTransformer.occStatus2PresenceAbsence(int occStatusId) |
Modifier and Type | Method and Description |
---|---|
PresenceAbsenceTerm |
ImportStateBase.getPresenceAbsenceTerm(java.util.UUID uuid) |
protected PresenceAbsenceTerm |
CdmImportBase.getPresenceTerm(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
boolean isAbsenceTerm) |
protected PresenceAbsenceTerm |
CdmImportBase.getPresenceTerm(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
boolean isAbsenceTerm,
TermVocabulary<PresenceAbsenceTerm> voc)
Returns a presence term for a given uuid by first ...
|
Modifier and Type | Method and Description |
---|---|
void |
ImportStateBase.putPresenceAbsenceTerm(PresenceAbsenceTerm presenceTerm) |
Modifier and Type | Method and Description |
---|---|
protected PresenceAbsenceTerm |
CdmImportBase.getPresenceTerm(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
boolean isAbsenceTerm,
TermVocabulary<PresenceAbsenceTerm> voc)
Returns a presence term for a given uuid by first ...
|
Modifier and Type | Field and Description |
---|---|
protected PresenceAbsenceTerm |
DbImportDistributionCreationMapper.status |
Modifier and Type | Method and Description |
---|---|
PresenceAbsenceTerm |
InputTransformerBase.getPresenceTermByKey(java.lang.String key) |
PresenceAbsenceTerm |
IInputTransformer.getPresenceTermByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
static DbImportDistributionCreationMapper<?> |
DbImportDistributionCreationMapper.NewFixedStatusInstance(java.lang.String dbIdAttribute,
java.lang.String objectToCreateNamespace,
java.lang.String dbTaxonFkAttribute,
java.lang.String taxonNamespace,
PresenceAbsenceTerm status)
Creates a Distribution with status
status and adds it to the description of a taxon. |
Constructor and Description |
---|
DbImportDistributionCreationMapper(java.lang.String dbIdAttribute,
java.lang.String objectToCreateNamespace,
java.lang.String dbTaxonFkAttribute,
java.lang.String taxonNamespace,
PresenceAbsenceTerm status) |
Modifier and Type | Method and Description |
---|---|
java.lang.String |
ExportTransformerBase.getCacheByPresenceAbsenceTerm(PresenceAbsenceTerm term) |
java.lang.String |
IExportTransformer.getCacheByPresenceAbsenceTerm(PresenceAbsenceTerm term) |
java.lang.Object |
ExportTransformerBase.getKeyByPresenceAbsenceTerm(PresenceAbsenceTerm term) |
java.lang.Object |
IExportTransformer.getKeyByPresenceAbsenceTerm(PresenceAbsenceTerm term) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvDemoRecordBase.getEstablishmentMeans(PresenceAbsenceTerm status) |
protected java.lang.String |
CsvDemoRecordBase.getOccurrenceStatus(PresenceAbsenceTerm status) |
static java.lang.String |
CsvDemoExportTransformer.transformToGbifEstablishmentMeans(PresenceAbsenceTerm status) |
static java.lang.String |
CsvDemoExportTransformer.transformToGbifOccStatus(PresenceAbsenceTerm status) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvRecordBaseRedlist.getEstablishmentMeans(PresenceAbsenceTerm status) |
protected java.lang.String |
CsvRecordBaseRedlist.getOccurrenceStatus(PresenceAbsenceTerm status) |
static java.lang.String |
CsvTaxExportTransformerRedlist.transformToGbifEstablishmentMeans(PresenceAbsenceTerm status) |
static java.lang.String |
CsvTaxExportTransformerRedlist.transformToGbifOccStatus(PresenceAbsenceTerm status) |
Modifier and Type | Method and Description |
---|---|
PresenceAbsenceTerm |
DwcaImportTransformer.getPresenceTermByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
PresenceAbsenceTerm |
DwcaDistributionRecord.getEstablishmentMeans() |
PresenceAbsenceTerm |
DwcaDistributionRecord.getOccurrenceStatus() |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
DwcaRecordBase.getEstablishmentMeans(PresenceAbsenceTerm status) |
protected java.lang.String |
DwcaRecordBase.getOccurrenceStatus(PresenceAbsenceTerm status) |
void |
DwcaDistributionRecord.setEstablishmentMeans(PresenceAbsenceTerm establishmentMeans) |
void |
DwcaDistributionRecord.setOccurrenceStatus(PresenceAbsenceTerm occurrenceStatus) |
static java.lang.String |
DwcaTaxExportTransformer.transformToGbifEstablishmentMeans(PresenceAbsenceTerm status) |
static java.lang.String |
DwcaTaxExportTransformer.transformToGbifOccStatus(PresenceAbsenceTerm status) |
Modifier and Type | Method and Description |
---|---|
protected PresenceAbsenceTerm |
MarkupImportBase.getPresenceAbsenceTerm(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
boolean isAbsenceTerm,
TermVocabulary<PresenceAbsenceTerm> voc) |
PresenceAbsenceTerm |
MarkupDocumentImport.getPresenceTerm(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
boolean isAbsenceTerm,
TermVocabulary<PresenceAbsenceTerm> voc) |
PresenceAbsenceTerm |
MarkupTransformer.getPresenceTermByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
protected PresenceAbsenceTerm |
MarkupImportBase.getPresenceAbsenceTerm(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
boolean isAbsenceTerm,
TermVocabulary<PresenceAbsenceTerm> voc) |
PresenceAbsenceTerm |
MarkupDocumentImport.getPresenceTerm(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
boolean isAbsenceTerm,
TermVocabulary<PresenceAbsenceTerm> voc) |
Modifier and Type | Method and Description |
---|---|
PresenceAbsenceTerm |
StreamImportBase.getPresenceTerm(STATE state,
java.util.UUID statusUuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
boolean isAbsenceTerm) |
Modifier and Type | Field and Description |
---|---|
protected static java.util.Map<java.util.UUID,PresenceAbsenceTerm> |
PresenceAbsenceTerm.termMap |
Modifier and Type | Method and Description |
---|---|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.ABSENT() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.CASUAL_PRESENCE_QUESTIONABLE()
Casual alien, presence questionable
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.CASUAL_REPORTED_IN_ERROR()
Casual alien, reported in error
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.CASUAL()
Casual alien or introduced: adventive (casual)
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.CULTIVATED_PRESENCE_QUESTIONABLE()
The taxon is cultivated but presence is questionable.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR()
The taxon is erroneously reported as cultivated.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.CULTIVATED()
The taxon is not native but cultivated.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.ENDEMIC_DOUBTFULLY_PRESENT()
The taxon is endemic for the given area but doubtfully present.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.ENDEMIC_FOR_THE_RELEVANT_AREA()
The taxon is endemic for the given area.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.ENDEMIC_REPORTED_IN_ERROR()
The taxon if it exists is endemic for the given area but was only
erroneously reported.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.ENDEMISM_UNKNOWN()
The taxon is present but with unknown endemism for the given area.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.getPresenceAbsenceTermByAbbreviation(java.lang.String abbrev) |
PresenceAbsenceTerm |
Distribution.getStatus()
Returns the
presence or absence term for this distribution. |
protected static PresenceAbsenceTerm |
PresenceAbsenceTerm.getTermByUuid(java.util.UUID uuid) |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED_ADVENTITIOUS()
Deprecated.
better use
CASUAL() , which has the same result (same semantics, but more precise) |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED_CULTIVATED() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED_REPORTED_IN_ERROR() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INTRODUCED() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INVASIVE_PRESENCE_QUESTIONABLE()
Invasive, presence questionable.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.INVASIVE()
Naturalized invasive.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE_REPORTED_IN_ERROR()
Same as
NATIVE() but the nativeness is doubtful, while presence
is NOT questionable |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE()
Same as
NATIVE() but the nativeness is doubtful, while presence
is NOT questionable |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE()
The taxon was formerly native, but is extinct now in the given area.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE()
Same as
NATIVE() but presence is questionable |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR()
Same as
NATIVE() but presence was reported in error, so
finally it is not native. |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATIVE()
Use native if the taxon is native in the according area.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATURALISED_PRESENCE_QUESTIONABLE() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATURALISED_REPORTED_IN_ERROR() |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NATURALISED()
Naturalized (or introduced: naturalized).
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NewAbsenceInstance(java.lang.String term,
java.lang.String label,
java.lang.String labelAbbrev)
Creates a new absence term with a description (in the
default language ),
a label and a label abbreviation. |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NewInstance()
Creates a new empty presence term.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NewPresenceInstance(java.lang.String term,
java.lang.String label,
java.lang.String labelAbbrev)
Creates a new presence term with a description (in the
default language ),
a label and a label abbreviation. |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NON_INVASIVE_PRESENCE_QUESTIONABLE()
The taxon is questionable present and not native in the given area (naturalized).
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NON_INVASIVE()
The taxon is present but not native in the given area (naturalized).
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.NOT_ENDEMIC_FOR_THE_RELEVANT_AREA()
The taxon is present but not endemic for the given area.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.PRESENT_DOUBTFULLY()
Presence of the taxon in the given area is doubtful.
|
static PresenceAbsenceTerm |
PresenceAbsenceTerm.PRESENT()
The taxon is present in the given area.
|
PresenceAbsenceTerm |
PresenceAbsenceTerm.readCsvLine(java.lang.Class<PresenceAbsenceTerm> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId) |
static PresenceAbsenceTerm |
PresenceAbsenceTerm.REPORTED_IN_ERROR()
The taxon is
absent in the given area
but was erroneously reported as present. |
Modifier and Type | Method and Description |
---|---|
static Distribution |
Distribution.NewInstance(NamedArea area,
PresenceAbsenceTerm status)
Creates a distribution instance with the given
named area and status . |
protected int |
PresenceAbsenceTerm.performCompareTo(PresenceAbsenceTerm presenceAbsenceTerm,
boolean skipVocabularyCheck)
Compares this OrderedTermBase with the specified OrderedTermBase for
order.
|
void |
Distribution.setStatus(PresenceAbsenceTerm status) |
Modifier and Type | Method and Description |
---|---|
PresenceAbsenceTerm |
PresenceAbsenceTerm.readCsvLine(java.lang.Class<PresenceAbsenceTerm> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId) |
protected void |
PresenceAbsenceTerm.setDefaultTerms(TermVocabulary<PresenceAbsenceTerm> termVocabulary) |
Modifier and Type | Method and Description |
---|---|
long |
IDescriptionDao.countDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence)
Returns a count of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
java.util.List<TaxonDescription> |
IDescriptionDao.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
Modifier and Type | Method and Description |
---|---|
long |
DescriptionDaoImpl.countDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm status) |
java.util.List<TaxonDescription> |
DescriptionDaoImpl.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm status,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
Pager<SearchResult<TaxonBase>> |
TaxonListController.doSearch(java.lang.String query,
java.util.UUID classificationUuid,
java.util.UUID subtreeUuid,
DefinedTermBaseList<NamedArea> areaList,
PresenceAbsenceTerm[] status,
java.lang.Integer pageNumber,
java.lang.Integer pageSize,
java.lang.Boolean doTaxa,
java.lang.Boolean doSynonyms,
java.lang.Boolean doMisappliedNames,
java.lang.Boolean doTaxaByCommonNames,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
Find Taxa, Synonyms, Common Names by name, either globally or in a specific geographic area.
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