Modifier and Type | Method and Description |
---|---|
TermVocabulary<Feature> |
IDescriptionService.getDefaultFeatureVocabulary()
Deprecated.
use TermService#getVocabulary(VocabularyType) instead
|
TermVocabulary<Feature> |
DescriptionServiceImpl.getDefaultFeatureVocabulary() |
TermVocabulary<Feature> |
IDescriptionService.getFeatureVocabulary(java.util.UUID uuid)
Deprecated.
use TermService#getVocabulary(VocabularyType) instead
|
TermVocabulary<Feature> |
DescriptionServiceImpl.getFeatureVocabulary(java.util.UUID uuid) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
MicroFormatQuantitativeDescriptionBuilder.buildFeature(Feature feature,
boolean doItBetter) |
protected java.lang.String |
MicroFormatCategoricalDescriptionBuilder.buildFeature(Feature feature,
boolean doItBetter) |
TextData |
DescriptionBuilder.buildTextDataFeature(Feature feature,
java.util.List<Language> languages)
Returns a TextData with the name of the feature.
|
Modifier and Type | Method and Description |
---|---|
long |
IDescriptionService.count(java.lang.Class<? extends DescriptionBase> type,
java.lang.Boolean hasImages,
java.lang.Boolean hasText,
java.util.Set<Feature> feature)
Count the descriptions of type
|
long |
DescriptionServiceImpl.count(java.lang.Class<? extends DescriptionBase> type,
java.lang.Boolean hasImages,
java.lang.Boolean hasText,
java.util.Set<Feature> feature) |
Pager<SearchResult<TaxonBase>> |
TaxonServiceImpl.findByDescriptionElementFullText(java.lang.Class<? extends DescriptionElementBase> clazz,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
java.util.List<Feature> features,
java.util.List<Language> languages,
boolean highlightFragments,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<SearchResult<TaxonBase>> |
ITaxonService.findByDescriptionElementFullText(java.lang.Class<? extends DescriptionElementBase> clazz,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
java.util.List<Feature> features,
java.util.List<Language> languages,
boolean highlightFragments,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Searches for TaxonBase instances by using the DescriptionElement free text index.
|
<T extends DescriptionElementBase> |
IDescriptionService.getDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Deprecated.
use
#pageDescriptionElements(DescriptionBase, Set, Class, Integer, Integer, List)
instead |
<T extends DescriptionElementBase> |
DescriptionServiceImpl.getDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Deprecated.
|
java.util.Map<DescriptionBase,java.util.Set<DescriptionElementBase>> |
DescriptiveDataSetService.getDescriptionElements(DescriptiveDataSet descriptiveDataSet,
java.util.Set<Feature> features,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.Map<DescriptionBase,java.util.Set<DescriptionElementBase>> |
IDescriptiveDataSetService.getDescriptionElements(DescriptiveDataSet descriptiveDataSet,
java.util.Set<Feature> features,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a Map of descriptions each with the description elements that match
the supplied features (or all description elements if no features are supplied)
|
<T extends DescriptionElementBase> |
IDescriptionService.getDescriptionElementsForTaxon(Taxon taxon,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Deprecated.
|
<T extends DescriptionElementBase> |
DescriptionServiceImpl.getDescriptionElementsForTaxon(Taxon taxon,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Deprecated.
|
<T extends DescriptionElementBase> |
IDescriptionService.listDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns description elements of type
|
<T extends DescriptionElementBase> |
DescriptionServiceImpl.listDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<T extends DescriptionElementBase> |
IDescriptionService.listDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
|
<T extends DescriptionElementBase> |
DescriptionServiceImpl.listDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Deprecated.
|
<T extends DescriptionElementBase> |
IDescriptionService.listDescriptionElementsForTaxon(Taxon taxon,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Provides access to all DescriptionElements associated with the given Taxon
via a TaxonDescrition.
|
<T extends DescriptionElementBase> |
DescriptionServiceImpl.listDescriptionElementsForTaxon(Taxon taxon,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<DescriptionBase> |
IDescriptionService.page(java.lang.Class<? extends DescriptionBase> type,
java.lang.Boolean hasMedia,
java.lang.Boolean hasText,
java.util.Set<Feature> feature,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
List the descriptions of type
|
Pager<DescriptionBase> |
DescriptionServiceImpl.page(java.lang.Class<? extends DescriptionBase> type,
java.lang.Boolean hasImages,
java.lang.Boolean hasText,
java.util.Set<Feature> feature,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
<T extends DescriptionElementBase> |
IDescriptionService.pageDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns description elements of type
|
<T extends DescriptionElementBase> |
DescriptionServiceImpl.pageDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<T extends DescriptionElementBase> |
IDescriptionService.pageDescriptionElementsForTaxon(Taxon taxon,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Provides access to all DescriptionElements associated with the given Taxon
via a TaxonDescrition.
|
<T extends DescriptionElementBase> |
DescriptionServiceImpl.pageDescriptionElementsForTaxon(Taxon taxon,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
protected LuceneSearch |
TaxonServiceImpl.prepareByDescriptionElementFullTextSearch(java.lang.Class<? extends CdmBase> clazz,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
java.util.List<Feature> features,
java.util.List<Language> languages,
boolean highlightFragments) |
Modifier and Type | Method and Description |
---|---|
CategoricalData |
RowWrapperDTO.addCategoricalData(Feature feature) |
QuantitativeData |
RowWrapperDTO.addQuantitativeData(Feature feature) |
DescriptionElementBase |
RowWrapperDTO.getDataValueForFeature(Feature feature) |
java.util.Collection<java.lang.String> |
RowWrapperDTO.getDisplayDataForFeature(Feature feature) |
void |
RowWrapperDTO.setDataValueForCategoricalData(Feature feature,
java.util.List<State> states) |
void |
RowWrapperDTO.setDataValueForQuantitativeData(Feature feature,
java.util.Map<StatisticalMeasure,java.util.List<java.lang.String>> textFields,
MeasurementUnit unit) |
Modifier and Type | Method and Description |
---|---|
static Feature |
BerlinModelTransformer.factCategory2Feature(int factCategoryId) |
Modifier and Type | Method and Description |
---|---|
static java.lang.Integer |
BerlinModelTransformer.textData2FactCategoryFk(Feature feature) |
Modifier and Type | Method and Description |
---|---|
protected Feature |
CdmImportBase.getFeature(STATE state,
java.util.UUID uuid)
Returns a feature if it exists, null otherwise.
|
protected Feature |
CdmImportBase.getFeature(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc)
Returns a feature for a given uuid by first checking if the uuid has already been used in this import, if not
checking if the feature exists in the database, if not creating it anew (with vocabulary etc.).
|
Feature |
ImportStateBase.getFeature(java.util.UUID uuid) |
Modifier and Type | Method and Description |
---|---|
java.util.Map<java.lang.Integer,Feature> |
ImportConfiguratorBase.getFeatureMap() |
Modifier and Type | Method and Description |
---|---|
protected TextData |
CdmImportBase.getFeaturePlaceholder(STATE state,
DescriptionBase<?> description,
Feature feature,
boolean createIfNotExists)
Returns the textdata that holds general information about a feature for a taxon description.
|
void |
ImportStateBase.putFeature(Feature feature) |
Modifier and Type | Method and Description |
---|---|
protected Feature |
CdmImportBase.getFeature(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc)
Returns a feature for a given uuid by first checking if the uuid has already been used in this import, if not
checking if the feature exists in the database, if not creating it anew (with vocabulary etc.).
|
void |
ImportConfiguratorBase.setFeatureMap(java.util.Map<java.lang.Integer,Feature> featureMap) |
Modifier and Type | Field and Description |
---|---|
protected Feature |
DbImportTextDataCreationMapper.defaultFeature |
Modifier and Type | Method and Description |
---|---|
protected Feature |
DbImportFeatureCreationMapper.createDefinedTerm(java.sql.ResultSet rs) |
Feature |
InputTransformerBase.getFeatureByKey(java.lang.String key) |
Feature |
IInputTransformer.getFeatureByKey(java.lang.String key) |
protected Feature |
DbImportFeatureCreationMapper.getTermFromState(java.util.UUID uuid) |
protected Feature |
DbImportFeatureCreationMapper.getTermFromTransformer(java.lang.String key,
IInputTransformer transformer) |
Modifier and Type | Method and Description |
---|---|
protected void |
DbImportFeatureCreationMapper.handleTermWithObject(DescriptionElementBase element,
Feature feature) |
static DbImportTextDataCreationMapper<?> |
DbImportTextDataCreationMapper.NewInstance(java.lang.String dbIdAttribute,
java.lang.String objectToCreateNamespace,
java.lang.String dbTaxonFkAttribute,
java.lang.String taxonNamespace,
java.lang.String dbTextAttribute,
Language language,
Feature feature,
TextFormat format)
Creates a TextData, adds the the in the language and the format defined and then adds it to the description of a taxon.
|
protected void |
DbImportFeatureCreationMapper.saveTermToState(Feature feature) |
Constructor and Description |
---|
DbImportTextDataCreationMapper(java.lang.String dbIdAttribute,
java.lang.String objectToCreateNamespace,
java.lang.String dbTaxonFkAttribute,
java.lang.String taxonNamespace,
java.lang.String dbTextAttribute,
Language language,
Feature feature,
TextFormat format) |
Modifier and Type | Method and Description |
---|---|
java.lang.String |
ExportTransformerBase.getCacheByFeature(Feature feature) |
java.lang.String |
IExportTransformer.getCacheByFeature(Feature feature) |
java.lang.Object |
ExportTransformerBase.getKeyByFeature(Feature feature) |
java.lang.Object |
IExportTransformer.getKeyByFeature(Feature feature) |
Modifier and Type | Method and Description |
---|---|
Feature |
CsvNameExportState.getNotesFeature() |
Modifier and Type | Method and Description |
---|---|
void |
CsvNameExportState.setNotesFeature(Feature feature) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Feature> |
CsvDemoExportConfigurator.getFeatures() |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvDemoRecordBase.getFeature(Feature feature) |
Modifier and Type | Method and Description |
---|---|
void |
CsvDemoExportConfigurator.setFeatures(java.util.List<Feature> features) |
void |
CsvDemoRecord.setPrintFeatures(java.util.List<Feature> features) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Feature> |
CsvTaxExportConfiguratorRedlist.getFeatures() |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvRecordBaseRedlist.getFeature(Feature feature) |
Modifier and Type | Method and Description |
---|---|
void |
CsvTaxExportConfiguratorRedlist.setFeatures(java.util.List<Feature> features) |
void |
CsvTaxRecordRedlist.setPrintFeatures(java.util.List<Feature> features) |
Modifier and Type | Method and Description |
---|---|
Feature |
DwcaImportTransformer.getFeatureByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
Feature |
DwcaDescriptionRecord.getType() |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
DwcaRecordBase.getFeature(Feature feature) |
void |
DwcaDescriptionRecord.setType(Feature type) |
Modifier and Type | Method and Description |
---|---|
protected Feature |
MarkupImportBase.getFeature(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc) |
Feature |
MarkupDocumentImport.getFeature(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc) |
Feature |
MarkupTransformer.getFeatureByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
TextData |
MarkupDocumentImport.getFeaturePlaceholder(MarkupImportState state,
DescriptionBase<?> description,
Feature feature,
boolean createIfNotExists) |
java.util.List<DescriptionElementBase> |
MarkupSpecimenImport.handleMaterialsExamined(MarkupImportState state,
javax.xml.stream.XMLEventReader reader,
javax.xml.stream.events.XMLEvent parentEvent,
Feature feature,
TaxonDescription defaultDescription) |
protected java.util.Map<java.lang.String,MarkupImportBase.SubheadingResult> |
MarkupImportBase.handleString(MarkupImportState state,
javax.xml.stream.XMLEventReader reader,
javax.xml.stream.events.XMLEvent parentEvent,
Feature feature)
Handle < string > .
|
FeatureSorterInfo |
MarkupImportState.putFeatureToCharSorterList(Feature feature) |
void |
MarkupImportState.putFeatureToGeneralSorterList(Feature feature) |
Modifier and Type | Method and Description |
---|---|
protected Feature |
MarkupImportBase.getFeature(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc) |
Feature |
MarkupDocumentImport.getFeature(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc) |
Constructor and Description |
---|
FeatureSorterInfo(Feature feature) |
Modifier and Type | Method and Description |
---|---|
Feature |
SDDTransformer.getFeatureByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
PolytomousKeyNode |
IkeyPlusImport.createPkNode(Feature feature,
KeyStatement statement) |
Modifier and Type | Method and Description |
---|---|
void |
SDDDocumentBuilder.buildBranches(TermNode<Feature> parent,
org.apache.xerces.dom.ElementImpl element,
boolean isRoot) |
Modifier and Type | Method and Description |
---|---|
Feature |
StreamImportBase.getFeature(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc) |
Modifier and Type | Method and Description |
---|---|
Feature |
StreamImportBase.getFeature(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<Feature> voc) |
Modifier and Type | Method and Description |
---|---|
static Feature |
TaxonXTransformer.descriptionType2feature(java.lang.String descriptionType)
Creates an cdm-NomenclaturalCode by the tcs NomenclaturalCode
|
Modifier and Type | Method and Description |
---|---|
java.util.Map<java.lang.Integer,Feature> |
TaxonXDescriptionImport.fillFactCategories(IImportConfigurator config,
CdmApplicationController cdmApp) |
Modifier and Type | Method and Description |
---|---|
protected Feature |
TaxonXExtractor.makeFeature(SpecimenOrObservationBase unit) |
Modifier and Type | Method and Description |
---|---|
protected java.util.Map<java.lang.String,Feature> |
TaxonXTreatmentExtractor.getFeaturesUsed() |
java.util.Map<java.lang.String,Feature> |
TaxonXXMLFieldGetter.getFeaturesUsed() |
Constructor and Description |
---|
TaxonXTreatmentExtractor(NomenclaturalCode nomenclaturalCode,
Classification classification,
TaxonXImport importer,
TaxonXImportState configState,
java.util.Map<java.lang.String,Feature> featuresMap,
Reference urlSource) |
TaxonXXMLFieldGetter(TaxonXDataHolder dataholder,
java.lang.String prefix,
org.w3c.dom.Document document,
TaxonXImport taxonXImport,
TaxonXImportState taxonXstate,
Classification classif,
java.util.Map<java.lang.String,Feature> featuresMap) |
Modifier and Type | Class and Description |
---|---|
class |
Character
A subclass of the Feature class that is meant for handling
Features/Characters for descriptions in the narrow sense of describing
an object.
|
Modifier and Type | Field and Description |
---|---|
protected static java.util.Map<java.util.UUID,Feature> |
Feature.termMap |
Modifier and Type | Method and Description |
---|---|
static Feature |
Feature.ADDITIONAL_PUBLICATION()
Returns the "additional_publication" feature.
|
static Feature |
Feature.ANATOMY()
Returns the "anatomy" feature.
|
static Feature |
Feature.BIOLOGY_ECOLOGY()
Returns the "biology_ecology" feature.
|
static Feature |
Feature.CHROMOSOME_NUMBER()
Returns the "chromosome number" feature.
|
static Feature |
Feature.CITATION()
Returns the "citation" feature.
|
static Feature |
Feature.COMMON_NAME()
Returns the "common_name" feature.
|
static Feature |
Feature.CONSERVATION()
Returns the "conservation" feature.
|
static Feature |
Feature.CULTIVATION()
Returns the "cultivation" feature.
|
static Feature |
Feature.DESCRIPTION()
Returns the "description" feature.
|
static Feature |
Feature.DIAGNOSIS()
Returns the "diagnosis" feature.
|
static Feature |
Feature.DISCUSSION()
Returns the "discussion" feature.
|
static Feature |
Feature.DISTRIBUTION_GENERAL()
Returns the feature for general text-based
distributions
|
static Feature |
Feature.DISTRIBUTION()
Returns the "distribution" feature.
|
static Feature |
Feature.ECOLOGY()
Returns the "ecology" feature.
|
static Feature |
Feature.ETYMOLOGY()
Returns the "etymology" feature.
|
Feature |
PolytomousKeyNode.getFeature() |
Feature |
DescriptionElementBase.getFeature()
Returns the
feature this description element is for. |
Feature |
FeatureState.getFeature() |
Feature |
Feature.getKindOf() |
Feature |
Feature.getPartOf() |
protected static Feature |
Feature.getTermByUuid(java.util.UUID uuid) |
static Feature |
Feature.HABITAT_ECOLOGY()
Returns the "habitat & ecology" feature.
|
static Feature |
Feature.HABITAT()
Returns the "habitat" feature.
|
static Feature |
Feature.HOSTPLANT()
Returns the "hostplant" feature.
|
static Feature |
Feature.HYBRID_PARENT()
Returns the "hybrid_parent" feature.
|
static Feature |
Feature.IMAGE()
Returns the "image" feature.
|
static Feature |
Feature.INDIVIDUALS_ASSOCIATION()
Returns the "individuals association" feature.
|
static Feature |
Feature.INTRODUCTION()
Returns the "introduction" feature.
|
static Feature |
Feature.KEY()
Returns the "key" feature.
|
static Feature |
Feature.LIFEFORM() |
static Feature |
Feature.MATERIALS_EXAMINED()
Returns the "materials_examined" feature.
|
static Feature |
Feature.MATERIALS_METHODS()
Returns the "materials_methods" feature.
|
static Feature |
Feature.NewInstance()
Creates a new empty feature instance.
|
static Feature |
Feature.NewInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev)
Creates a new feature instance with a description (in the
default language ),
a label and a label abbreviation. |
static Feature |
Feature.NOTES()
Returns the "notes" feature.
|
static Feature |
Feature.OBSERVATION() |
static Feature |
Feature.OCCURRENCE()
Returns the "occurrence" feature.
|
static Feature |
Feature.PATHOGEN_AGENT()
Returns the "pathogen agent" feature.
|
static Feature |
Feature.PHENOLOGY()
Returns the "phenology" feature.
|
static Feature |
Feature.PROTOLOGUE()
Returns the "protologue" feature.
|
Feature |
Feature.readCsvLine(java.lang.Class<Feature> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId)
Creates and returns a new feature instance on the basis of a given string
list (containing an UUID, an URI, a label and a description) and a given
language to be associated with the description. |
static Feature |
Feature.SPECIMEN() |
static Feature |
Feature.STATUS()
The status of a taxon.
|
static Feature |
Feature.SYSTEMATICS() |
static Feature |
Feature.UNKNOWN()
Returns the "unknown" feature.
|
static Feature |
Feature.USERECORD() |
static Feature |
Feature.USES()
Returns the "uses" feature.
|
Modifier and Type | Method and Description |
---|---|
TermTree<Feature> |
DescriptiveDataSet.getDescriptiveSystem() |
java.util.Set<Feature> |
Feature.getGeneralizationOf() |
java.util.Set<Feature> |
Feature.getIncludes() |
Modifier and Type | Method and Description |
---|---|
static QuantitativeData |
QuantitativeData.NewExactValueInstance(Feature feature,
float... exactValues)
Creates a new quantitative data instance of type feature with defined exact value.
|
static CategoricalData |
CategoricalData.NewInstance(Feature feature) |
static TaxonInteraction |
TaxonInteraction.NewInstance(Feature feature)
Creates a new empty taxon interaction instance and also sets the feature
|
static TextData |
TextData.NewInstance(Feature feature)
Creates a new text data instance with the
feature
to be described. |
static QuantitativeData |
QuantitativeData.NewInstance(Feature feature)
Creates a new quantitative data instance of type feature.
|
static FeatureState |
FeatureState.NewInstance(Feature feature,
State state) |
static TextData |
TextData.NewInstance(Feature feature,
java.lang.String text,
Language language,
TextFormat format)
Creates a new text data instance with a given text in a given particular
language and with the given text format for structuring it. |
static CategoricalData |
CategoricalData.NewInstance(State state,
Feature feature)
Creates a new empty categorical data instance.
|
static PolytomousKeyNode |
PolytomousKeyNode.NewInstance(java.lang.String statement,
java.lang.String question,
Taxon taxon,
Feature feature)
Creates a new polytomous key node instance.
|
static QuantitativeData |
QuantitativeData.NewMinMaxInstance(Feature feature,
float min,
float max)
Creates a new quantitative data instance of type feature with defined min and may value.
|
void |
PolytomousKeyNode.setFeature(Feature feature) |
void |
DescriptionElementBase.setFeature(Feature feature) |
void |
Distribution.setFeature(Feature feature)
Deprecated.
Deprecated because
feature should always be DISTRIBUTION
for all distribution instances and therefore it should not be changed. |
void |
CommonTaxonName.setFeature(Feature feature)
Deprecated.
Deprecated because
feature should always be COMMON_NAME
for all common name instances. |
void |
FeatureState.setFeature(Feature feature) |
void |
Feature.setKindOf(Feature kindOf) |
void |
Feature.setPartOf(Feature partOf) |
Modifier and Type | Method and Description |
---|---|
Feature |
Feature.readCsvLine(java.lang.Class<Feature> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId)
Creates and returns a new feature instance on the basis of a given string
list (containing an UUID, an URI, a label and a description) and a given
language to be associated with the description. |
protected void |
Feature.setDefaultTerms(TermVocabulary<Feature> termVocabulary) |
void |
DescriptiveDataSet.setDescriptiveSystem(TermTree<Feature> descriptiveSystem) |
protected void |
Feature.setGeneralizationOf(java.util.Set<Feature> value) |
protected void |
Feature.setIncludes(java.util.Set<Feature> includes) |
Constructor and Description |
---|
CategoricalData(java.util.List<State> states,
Feature feature)
Class constructor: creates a new empty categorical data instance.
|
DescriptionElementBase(Feature feature)
Class constructor: creates a new description element instance with the
given
feature that is described or measured. |
FeatureState(Feature feature,
State state) |
QuantitativeData(Feature feature)
Class constructor: creates a new empty quantitative data instance.
|
TextData(Feature feature)
Class constructor: creates a new text data instance with the
feature
to be described. |
Modifier and Type | Method and Description |
---|---|
<T extends DescriptionElementBase> |
Taxon.getDescriptionItems(Feature feature,
java.lang.Class<T> clazz)
Compiles all description items attached to this taxon having the given feature
and being of the given class.
|
Modifier and Type | Method and Description |
---|---|
static TermTree<Feature> |
TermTree.NewFeatureInstance() |
static TermTree<Feature> |
TermTree.NewFeatureInstance(java.util.List<Feature> featureList)
|
static TermTree<Feature> |
TermTree.NewInstance()
Deprecated.
since 5.9. Use
TermTree.NewFeatureInstance() instead |
static TermTree<Feature> |
TermTree.NewInstance(java.util.List<Feature> featureList)
Deprecated.
sinde 5.9 use
TermTree.NewFeatureInstance(List) instead |
static TermTree<? extends Feature> |
TermTree.NewInstance(java.util.UUID uuid)
Deprecated.
since 5.9, use
TermTree.NewFeatureInstance(UUID) instead |
Modifier and Type | Method and Description |
---|---|
FeatureState |
TermNode.addApplicableState(Feature feature,
State applicableState) |
FeatureState |
TermNode.addInapplicableState(Feature feature,
State inapplicableState) |
Modifier and Type | Method and Description |
---|---|
static TermTree<Feature> |
TermTree.NewFeatureInstance(java.util.List<Feature> featureList)
|
static TermTree<Feature> |
TermTree.NewInstance(java.util.List<Feature> featureList)
Deprecated.
sinde 5.9 use
TermTree.NewFeatureInstance(List) instead |
Modifier and Type | Method and Description |
---|---|
<T extends DescriptionElementBase> |
IDescriptionDao.countDescriptionElementForTaxon(java.util.UUID taxonUuid,
java.util.Set<Feature> features,
java.lang.Class<T> type) |
<T extends DescriptionElementBase> |
IDescriptionDao.countDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> type)
Returns a count of description elements of type
|
<T extends DescriptionElementBase> |
IDescriptionDao.countDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> type)
Deprecated.
|
long |
IDescriptionDao.countDescriptions(java.lang.Class<? extends DescriptionBase> type,
java.lang.Boolean hasImages,
java.lang.Boolean hasText,
java.util.Set<Feature> feature)
Count the descriptions of type
|
<T extends DescriptionElementBase> |
IDescriptionDao.getDescriptionElementForTaxon(java.util.UUID taxonUuid,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<T extends DescriptionElementBase> |
IDescriptionDao.getDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns description elements of type
|
<T extends DescriptionElementBase> |
IDescriptionDao.getDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
|
java.util.Map<DescriptionBase,java.util.Set<DescriptionElementBase>> |
IDescriptiveDataSetDao.getDescriptionElements(DescriptiveDataSet descriptiveDataSet,
java.util.Set<Feature> features,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<java.lang.Integer> |
IDescriptionDao.getIndividualAssociationSpecimenIDs(java.util.UUID taxonUuid,
java.util.Set<Feature> features,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Return a list of ids of the specimens attached to a taxon via IndividualsAssociations
|
java.util.List<DescriptionBase> |
IDescriptionDao.listDescriptions(java.lang.Class<? extends DescriptionBase> type,
java.lang.Boolean hasMedia,
java.lang.Boolean hasText,
java.util.Set<Feature> feature,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
List the descriptions of type
|
Modifier and Type | Method and Description |
---|---|
<T extends DescriptionElementBase> |
DescriptionDaoImpl.countDescriptionElementForTaxon(java.util.UUID taxonUuid,
java.util.Set<Feature> features,
java.lang.Class<T> type) |
<T extends DescriptionElementBase> |
DescriptionDaoImpl.countDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> clazz) |
<T extends DescriptionElementBase> |
DescriptionDaoImpl.countDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> clazz) |
long |
DescriptionDaoImpl.countDescriptions(java.lang.Class<? extends DescriptionBase> clazz,
java.lang.Boolean hasImages,
java.lang.Boolean hasText,
java.util.Set<Feature> features) |
<T extends DescriptionElementBase> |
DescriptionDaoImpl.getDescriptionElementForTaxon(java.util.UUID taxonUuid,
java.util.Set<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<T extends DescriptionElementBase> |
DescriptionDaoImpl.getDescriptionElements(DescriptionBase description,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.util.Set<Feature> features,
java.lang.Class<T> clazz,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<T extends DescriptionElementBase> |
DescriptionDaoImpl.getDescriptionElements(DescriptionBase description,
java.util.Set<Feature> features,
java.lang.Class<T> clazz,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.Map<DescriptionBase,java.util.Set<DescriptionElementBase>> |
DescriptiveDataSetDao.getDescriptionElements(DescriptiveDataSet descriptiveDataSet,
java.util.Set<Feature> features,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<java.lang.Integer> |
DescriptionDaoImpl.getIndividualAssociationSpecimenIDs(java.util.UUID taxonUuid,
java.util.Set<Feature> features,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<DescriptionBase> |
DescriptionDaoImpl.listDescriptions(java.lang.Class<? extends DescriptionBase> clazz,
java.lang.Boolean hasImages,
java.lang.Boolean hasText,
java.util.Set<Feature> features,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Should use a DetachedCriteria & subquery, but HHH-158 prevents this, for now.
|
Modifier and Type | Method and Description |
---|---|
<T extends DescriptionElementBase> |
DescriptionElementListController.doGetDescriptionElementsForTaxon(java.util.UUID taxon_uuid,
DefinedTermBaseList<Feature> features,
java.lang.Class<T> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
Requires the query parameter "taxon" to be present
|
Pager<? extends DescriptionElementBase> |
DescriptionElementListController.doPageDescriptionElementsByFeature(DefinedTermBaseList<Feature> features,
java.lang.Class<? extends DescriptionBase> descriptionType,
java.lang.Class<? extends DescriptionElementBase> type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
Requires the query parameter "descriptionType" to be present
|
Modifier and Type | Method and Description |
---|---|
Feature |
LinkedPolytomousKeyNodeRowDto.getRowFeature() |
Modifier and Type | Method and Description |
---|---|
void |
LinkedPolytomousKeyNodeRowDto.setRowFeature(Feature RowFeature) |
Modifier and Type | Method and Description |
---|---|
TermTree<Feature> |
PolytomousKeyGeneratorConfigurator.getDependenciesTree() |
java.util.List<Feature> |
PolytomousKeyGeneratorConfigurator.getFeatures() |
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