Uses of Class
eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase

Packages that use PresenceAbsenceTermBase

Package	Description
eu.etaxonomy.cdm.api.service
eu.etaxonomy.cdm.api.service.description
eu.etaxonomy.cdm.ext.geo
eu.etaxonomy.cdm.io.berlinModel
eu.etaxonomy.cdm.io.common.mapping
eu.etaxonomy.cdm.io.common.mapping.out
eu.etaxonomy.cdm.io.csv.redlist.demo
eu.etaxonomy.cdm.io.csv.redlist.out
eu.etaxonomy.cdm.io.dwca.out
eu.etaxonomy.cdm.io.markup
eu.etaxonomy.cdm.model.description	Provides classes: to describe specimens, observations or taxa, to associate other factual informations to specimens, observations or taxa (including distribution), to supply additional information about taxon names and to support identification by means of keys. Related documentation UML Diagrams
eu.etaxonomy.cdm.persistence.dao.description
eu.etaxonomy.cdm.persistence.dao.hibernate.description
eu.etaxonomy.cdm.persistence.dao.taxon.tmp
eu.etaxonomy.cdm.remote.controller
eu.etaxonomy.cdm.remote.dto.vaadin

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.api.service

Methods in eu.etaxonomy.cdm.api.service with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
Pager<TaxonDescription>	DescriptionServiceImpl.searchDescriptionByDistribution(Set<NamedArea> namedAreas, PresenceAbsenceTermBase presence, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) FIXME Candidate for harmonization Rename: searchByDistribution
Pager<TaxonDescription>	IDescriptionService.searchDescriptionByDistribution(Set<NamedArea> namedAreas, PresenceAbsenceTermBase presence, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally filtered by a type of PresenceAbsenceTerm e.g.

Method parameters in eu.etaxonomy.cdm.api.service with type arguments of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
protected org.apache.lucene.search.Query	TaxonServiceImpl.createByDistributionJoinQuery(List<NamedArea> namedAreaList, List<PresenceAbsenceTermBase<?>> distributionStatusList, QueryFactory queryFactory)
Pager<SearchResult<TaxonBase>>	TaxonServiceImpl.findByDistribution(List<NamedArea> areaFilter, List<PresenceAbsenceTermBase<?>> statusFilter, Classification classification, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths)
Pager<SearchResult<TaxonBase>>	ITaxonService.findByDistribution(List<NamedArea> areaFilter, List<PresenceAbsenceTermBase<?>> statusFilter, Classification classification, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths)
Pager<SearchResult<TaxonBase>>	TaxonServiceImpl.findTaxaAndNamesByFullText(EnumSet<TaxaAndNamesSearchMode> searchModes, String queryString, Classification classification, Set<NamedArea> namedAreas, Set<PresenceAbsenceTermBase<?>> distributionStatus, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths)
Pager<SearchResult<TaxonBase>>	ITaxonService.findTaxaAndNamesByFullText(EnumSet<TaxaAndNamesSearchMode> searchModes, String queryString, Classification classification, Set<NamedArea> namedAreas, Set<PresenceAbsenceTermBase<?>> distributionStatus, List<Language> languages, boolean highlightFragments, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) Searches for TaxonBase instances using the TaxonBase free text index.
protected LuceneSearch	TaxonServiceImpl.prepareByDistributionSearch(List<NamedArea> namedAreaList, List<PresenceAbsenceTermBase<?>> distributionStatusList, Classification classification) This method has been primarily created for testing the area join query but might also be useful in other situations

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.api.service.description

Methods in eu.etaxonomy.cdm.api.service.description that return types with arguments of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
List<PresenceAbsenceTermBase<?>>	TransmissionEngineDistribution.getByAreaIgnoreStatusList() byAreaIgnoreStatusList contains by default: AbsenceTerm.CULTIVATED_REPORTED_IN_ERROR() AbsenceTerm.INTRODUCED_REPORTED_IN_ERROR() AbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED() AbsenceTerm.NATIVE_REPORTED_IN_ERROR() AbsenceTerm.NATIVE_FORMERLY_NATIVE()
List<PresenceAbsenceTermBase<?>>	TransmissionEngineDistribution.getByRankIgnoreStatusList() byRankIgnoreStatusList contains by default PresenceTerm.ENDEMIC_FOR_THE_RELEVANT_AREA()

Method parameters in eu.etaxonomy.cdm.api.service.description with type arguments of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
void	TransmissionEngineDistribution.setByAreaIgnoreStatusList(List<PresenceAbsenceTermBase<?>> byAreaIgnoreStatusList)
void	TransmissionEngineDistribution.setByRankIgnoreStatusList(List<PresenceAbsenceTermBase<?>> byRankIgnoreStatusList)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.ext.geo

Methods in eu.etaxonomy.cdm.ext.geo that return types with arguments of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
static Map<PresenceAbsenceTermBase<?>,Color>	EditGeoServiceUtilities.buildStatusColorMap(String statusColorJson, ITermService termService)

Method parameters in eu.etaxonomy.cdm.ext.geo with type arguments of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
DistributionInfoDTO	EditGeoService.composeDistributionInfoFor(EnumSet<DistributionInfoDTO.InfoPart> parts, UUID taxonUUID, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Set<NamedAreaLevel> omitLevels, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> languages, List<String> propertyPaths)
DistributionInfoDTO	IEditGeoService.composeDistributionInfoFor(EnumSet<DistributionInfoDTO.InfoPart> parts, UUID taxonUUID, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Set<NamedAreaLevel> omitLevels, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> languages, List<String> propertyPaths)
String	EditGeoService.getDistributionServiceRequestParameterString(List<TaxonDescription> taxonDescriptions, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> langs)
String	IEditGeoService.getDistributionServiceRequestParameterString(List<TaxonDescription> taxonDescriptions, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> langs) Retrieve a parameter string to pass to an EditGeoService endpoint The endpoint will deliver a a map generated by the Edit Geo Service for the given TaxonDescription
static String	EditGeoServiceUtilities.getDistributionServiceRequestParameterString(Set<Distribution> distributions, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, IGeoServiceAreaMapping mapping, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, String projectToLayer, List<Language> languages) Returns the parameter String for the EDIT geo webservice to create a dsitribution map.
String	EditGeoService.getDistributionServiceRequestParameterString(Set<Distribution> distributions, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> langs)
String	IEditGeoService.getDistributionServiceRequestParameterString(Set<Distribution> distributions, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> langs)
String	EditGeoService.getDistributionServiceRequestParameterString(TaxonDescription taxonDescription, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> langs) Deprecated.
String	IEditGeoService.getDistributionServiceRequestParameterString(TaxonDescription description, boolean subAreaPreference, boolean statusOrderPreference, Set<MarkerType> hideMarkedAreas, Map<PresenceAbsenceTermBase<?>,Color> presenceAbsenceTermColors, List<Language> langs) Deprecated. use #getDistributionServiceRequestParameterString(List, Map, int, int, String, String, List) instead

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.io.berlinModel

Methods in eu.etaxonomy.cdm.io.berlinModel that return PresenceAbsenceTermBase

Modifier and Type	Method and Description
static PresenceAbsenceTermBase<?>	BerlinModelTransformer.occStatus2PresenceAbsence(int occStatusId)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.io.common.mapping

Fields in eu.etaxonomy.cdm.io.common.mapping declared as PresenceAbsenceTermBase

Modifier and Type	Field and Description
protected PresenceAbsenceTermBase	DbImportDistributionCreationMapper.status

Methods in eu.etaxonomy.cdm.io.common.mapping that return PresenceAbsenceTermBase

Modifier and Type	Method and Description
PresenceAbsenceTermBase	IInputTransformer.getPresenceTermByKey(String key)
PresenceAbsenceTermBase	InputTransformerBase.getPresenceTermByKey(String key)

Methods in eu.etaxonomy.cdm.io.common.mapping with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
static DbImportDistributionCreationMapper<?>	DbImportDistributionCreationMapper.NewFixedStatusInstance(String dbIdAttribute, String objectToCreateNamespace, String dbTaxonFkAttribute, String taxonNamespace, PresenceAbsenceTermBase<?> status) Creates a Distribution with status status and adds it to the description of a taxon.

Constructors in eu.etaxonomy.cdm.io.common.mapping with parameters of type PresenceAbsenceTermBase

Constructor and Description
DbImportDistributionCreationMapper(String dbIdAttribute, String objectToCreateNamespace, String dbTaxonFkAttribute, String taxonNamespace, PresenceAbsenceTermBase status)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.io.common.mapping.out

Methods in eu.etaxonomy.cdm.io.common.mapping.out with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
String	ExportTransformerBase.getCacheByPresenceAbsenceTerm(PresenceAbsenceTermBase term)
String	IExportTransformer.getCacheByPresenceAbsenceTerm(PresenceAbsenceTermBase term)
Object	ExportTransformerBase.getKeyByPresenceAbsenceTerm(PresenceAbsenceTermBase term)
Object	IExportTransformer.getKeyByPresenceAbsenceTerm(PresenceAbsenceTermBase term)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.io.csv.redlist.demo

Methods in eu.etaxonomy.cdm.io.csv.redlist.demo with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
protected String	CsvDemoRecordBase.getEstablishmentMeans(PresenceAbsenceTermBase<?> status)
protected String	CsvDemoRecordBase.getOccurrenceStatus(PresenceAbsenceTermBase<?> status)
static String	CsvDemoExportTransformer.transformToGbifEstablishmentMeans(PresenceAbsenceTermBase<?> status)
static String	CsvDemoExportTransformer.transformToGbifOccStatus(PresenceAbsenceTermBase<?> status)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.io.csv.redlist.out

Methods in eu.etaxonomy.cdm.io.csv.redlist.out with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
protected String	CsvRecordBaseRedlist.getEstablishmentMeans(PresenceAbsenceTermBase<?> status)
protected String	CsvRecordBaseRedlist.getOccurrenceStatus(PresenceAbsenceTermBase<?> status)
static String	CsvTaxExportTransformerRedlist.transformToGbifEstablishmentMeans(PresenceAbsenceTermBase<?> status)
static String	CsvTaxExportTransformerRedlist.transformToGbifOccStatus(PresenceAbsenceTermBase<?> status)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.io.dwca.out

Methods in eu.etaxonomy.cdm.io.dwca.out that return PresenceAbsenceTermBase

Modifier and Type	Method and Description
PresenceAbsenceTermBase	DwcaDistributionRecord.getEstablishmentMeans()
PresenceAbsenceTermBase<?>	DwcaDistributionRecord.getOccurrenceStatus()

Methods in eu.etaxonomy.cdm.io.dwca.out with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
protected String	DwcaRecordBase.getEstablishmentMeans(PresenceAbsenceTermBase<?> status)
protected String	DwcaRecordBase.getOccurrenceStatus(PresenceAbsenceTermBase<?> status)
void	DwcaDistributionRecord.setEstablishmentMeans(PresenceAbsenceTermBase establishmentMeans)
void	DwcaDistributionRecord.setOccurrenceStatus(PresenceAbsenceTermBase<?> occurrenceStatus)
static String	DwcaTaxExportTransformer.transformToGbifEstablishmentMeans(PresenceAbsenceTermBase<?> status)
static String	DwcaTaxExportTransformer.transformToGbifOccStatus(PresenceAbsenceTermBase<?> status)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.io.markup

Methods in eu.etaxonomy.cdm.io.markup that return PresenceAbsenceTermBase

Modifier and Type	Method and Description
PresenceAbsenceTermBase	MarkupTransformer.getPresenceTermByKey(String key)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.model.description

Classes in eu.etaxonomy.cdm.model.description with type parameters of type PresenceAbsenceTermBase

Modifier and Type	Class and Description
class	PresenceAbsenceTermBase<T extends PresenceAbsenceTermBase<?>> This (abstract) class represents terms describing the absence (like "extinct") or the presence (like "cultivated") of a taxon in a named area.

Subclasses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.model.description

Modifier and Type	Class and Description
class	AbsenceTerm This class represents terms describing different types of absence (like "extinct" or just "absent") of a taxon in a particular area.
class	PresenceTerm This class represents terms describing different types of presence (like "native" or "introduced") of a taxon in a particular area.

Methods in eu.etaxonomy.cdm.model.description that return PresenceAbsenceTermBase

Modifier and Type	Method and Description
PresenceAbsenceTermBase<?>	Distribution.getStatus() Returns the presence or absence term for this distribution.

Methods in eu.etaxonomy.cdm.model.description with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
static Distribution	Distribution.NewInstance(NamedArea area, PresenceAbsenceTermBase<?> status) Creates a distribution instance with the given named area and status.
void	Distribution.setStatus(PresenceAbsenceTermBase<?> status)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.persistence.dao.description

Methods in eu.etaxonomy.cdm.persistence.dao.description with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
int	IDescriptionDao.countDescriptionByDistribution(Set<NamedArea> namedAreas, PresenceAbsenceTermBase presence) Returns a count of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally filtered by a type of PresenceAbsenceTerm e.g.
List<TaxonDescription>	IDescriptionDao.searchDescriptionByDistribution(Set<NamedArea> namedAreas, PresenceAbsenceTermBase presence, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally filtered by a type of PresenceAbsenceTerm e.g.

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.persistence.dao.hibernate.description

Methods in eu.etaxonomy.cdm.persistence.dao.hibernate.description with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
int	DescriptionDaoImpl.countDescriptionByDistribution(Set<NamedArea> namedAreas, PresenceAbsenceTermBase status)
List<TaxonDescription>	DescriptionDaoImpl.searchDescriptionByDistribution(Set<NamedArea> namedAreas, PresenceAbsenceTermBase status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths)

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.persistence.dao.taxon.tmp

Methods in eu.etaxonomy.cdm.persistence.dao.taxon.tmp that return types with arguments of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
List<LogicFilter<PresenceAbsenceTermBase>>	TaxonNodeFilter.getDistributionStatusFilter()

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.remote.controller

Method parameters in eu.etaxonomy.cdm.remote.controller with type arguments of type PresenceAbsenceTermBase

Modifier and Type

Method and Description

Pager<SearchResult<TaxonBase>>

TaxonListController.doSearch(String query, UUID treeUuid, DefinedTermBaseList<NamedArea> areaList, Set<PresenceAbsenceTermBase<?>> status, Integer pageNumber, Integer pageSize, Boolean doTaxa, Boolean doSynonyms, Boolean doMisappliedNames, Boolean doTaxaByCommonNames, javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response) Find Taxa, Synonyms, Common Names by name, either globally or in a specific geographic area.

Uses of PresenceAbsenceTermBase in eu.etaxonomy.cdm.remote.dto.vaadin

Methods in eu.etaxonomy.cdm.remote.dto.vaadin that return PresenceAbsenceTermBase

Modifier and Type	Method and Description
PresenceAbsenceTermBase<?>	CdmTaxonTableCollection.getDistributionStatus()

Methods in eu.etaxonomy.cdm.remote.dto.vaadin with parameters of type PresenceAbsenceTermBase

Modifier and Type	Method and Description
void	CdmTaxonTableCollection.setDistributionStatus(PresenceAbsenceTermBase<?> status)

Constructor parameters in eu.etaxonomy.cdm.remote.dto.vaadin with type arguments of type PresenceAbsenceTermBase

Constructor and Description
CdmTaxonTableCollection(Taxon taxon, Collection<DescriptionElementBase> listTaxonDescription, List<PresenceAbsenceTermBase> termList)