eu.etaxonomy.taxeditor.molecular.io.wizard

Class ExportSingleReadAlignmentWizardModel

java.lang.Object

eu.etaxonomy.taxeditor.molecular.io.wizard.ExportSingleReadAlignmentWizardModel

public class ExportSingleReadAlignmentWizardModel
extends java.lang.Object

The data model for a wizard to export single read alignments to different file formats using JPhyloIO.

Author:

Ben Stöver

Field Summary

Fields

Modifier and Type	Field and Description
protected static java.util.List<info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo>	FORMATS
protected static info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory	READER_WRITER_FACTORY

Constructor Summary

Constructors

Constructor and Description
ExportSingleReadAlignmentWizardModel()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getConsensusSequenceLabel()
protected org.eclipse.core.databinding.observable.value.IObservableValue	getConsensusSequenceLabelObservable()
protected org.eclipse.core.databinding.observable.value.IObservableValue	getElongateSequencesObservable()
java.lang.String	getElongationToken()
protected org.eclipse.core.databinding.observable.value.IObservableValue	getExportConsensusSequenceObservable()
protected org.eclipse.core.databinding.observable.value.IObservableValue	getExportSingleReadsObservable()
java.lang.String	getFileName()
protected org.eclipse.core.databinding.observable.value.IObservableValue	getFileNameObservable()
info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo	getFormatInfo() Returns the JPhyloIO format info object to be used for exporting.
protected org.eclipse.core.databinding.observable.value.IObservableValue	getFormatInfoObservable()
protected org.eclipse.core.databinding.observable.value.IObservableValue	getUseGapTokenObservable()
boolean	isExportConsensusSequence()
boolean	isExportSingleReads()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

READER_WRITER_FACTORY

protected static final info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory READER_WRITER_FACTORY

FORMATS

protected static final java.util.List<info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo> FORMATS

Constructor Detail

ExportSingleReadAlignmentWizardModel

public ExportSingleReadAlignmentWizardModel()

Method Detail

getFormatInfoObservable

protected org.eclipse.core.databinding.observable.value.IObservableValue getFormatInfoObservable()

getFormatInfo

public info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo getFormatInfo()

Returns the JPhyloIO format info object to be used for exporting.

Returns:

the format info

getFileName

public java.lang.String getFileName()

getFileNameObservable

protected org.eclipse.core.databinding.observable.value.IObservableValue getFileNameObservable()

isExportSingleReads

public boolean isExportSingleReads()

getExportSingleReadsObservable

protected org.eclipse.core.databinding.observable.value.IObservableValue getExportSingleReadsObservable()

isExportConsensusSequence

public boolean isExportConsensusSequence()

getExportConsensusSequenceObservable

protected org.eclipse.core.databinding.observable.value.IObservableValue getExportConsensusSequenceObservable()

getConsensusSequenceLabel

public java.lang.String getConsensusSequenceLabel()

getConsensusSequenceLabelObservable

protected org.eclipse.core.databinding.observable.value.IObservableValue getConsensusSequenceLabelObservable()

getElongationToken

public java.lang.String getElongationToken()

getElongateSequencesObservable

protected org.eclipse.core.databinding.observable.value.IObservableValue getElongateSequencesObservable()

getUseGapTokenObservable

protected org.eclipse.core.databinding.observable.value.IObservableValue getUseGapTokenObservable()