public class CDMPherogramAlignmentObjectTranslator extends info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractXMLObjectTranslator<eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[]> implements SingleReadAlignmentRDFXMLConstants
SingleReadAlignment
object from and
to XML.ATTR_POSITION, ATTR_SHIFT, DATA_TYPE_NAMESPACE_PREFIX, DATA_TYPE_NAMESPACE_URI, DATA_TYPE_PHERORAGM_ALIGNMENT, NAMESPACE_URI_PREFIX, PHEROGRAM_ALIGNMENT_NAMESPACE_PREFIX, PHEROGRAM_ALIGNMENT_NAMESPACE_URI, PREDICATE_HAS_LEFT_CUT_POSITION, PREDICATE_HAS_PHEROGRAM, PREDICATE_HAS_PHEROGRAM_ALIGNMENT, PREDICATE_HAS_RIGHT_CUT_POSITION, PREDICATE_IS_CONSENSUS_SEQUENCE, PREDICATE_IS_REVERSE_COMPLEMENTED, PREDICATE_IS_SINGLE_READ, PREDICATE_NAMESPACE_PREFIX, PREDICATE_NAMESPACE_URI, TAG_SHIFT, TAG_SHIFTS
Constructor and Description |
---|
CDMPherogramAlignmentObjectTranslator() |
Modifier and Type | Method and Description |
---|---|
java.lang.Class<eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[]> |
getObjectClass() |
eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[] |
readXMLRepresentation(javax.xml.stream.XMLEventReader reader,
info.bioinfweb.jphyloio.ReaderStreamDataProvider<?> streamDataProvider) |
void |
writeXMLRepresentation(javax.xml.stream.XMLStreamWriter writer,
java.lang.Object object,
info.bioinfweb.jphyloio.WriterStreamDataProvider<?> streamDataProvider) |
hasStringRepresentation, javaToRepresentation, representationToJava
public CDMPherogramAlignmentObjectTranslator()
public java.lang.Class<eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[]> getObjectClass()
getObjectClass
in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator<eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[]>
public eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[] readXMLRepresentation(javax.xml.stream.XMLEventReader reader, info.bioinfweb.jphyloio.ReaderStreamDataProvider<?> streamDataProvider) throws java.io.IOException, javax.xml.stream.XMLStreamException, info.bioinfweb.jphyloio.objecttranslation.InvalidObjectSourceDataException
readXMLRepresentation
in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator<eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[]>
java.io.IOException
javax.xml.stream.XMLStreamException
info.bioinfweb.jphyloio.objecttranslation.InvalidObjectSourceDataException
public void writeXMLRepresentation(javax.xml.stream.XMLStreamWriter writer, java.lang.Object object, info.bioinfweb.jphyloio.WriterStreamDataProvider<?> streamDataProvider) throws java.io.IOException, javax.xml.stream.XMLStreamException, java.lang.ClassCastException
writeXMLRepresentation
in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator<eu.etaxonomy.cdm.model.molecular.SingleReadAlignment.Shift[]>
java.io.IOException
javax.xml.stream.XMLStreamException
java.lang.ClassCastException
Copyright © 2007-2018. All Rights Reserved.