Class | Description |
---|---|
AlignmentEditorCopyHandlerE4 |
Handler that copies the currently selected nucleotides from an alignment editor to the clipboard.
|
AlignmentEditorCutHandlerE4 |
Handler that cuts the currently selected nucleotides from an alignment editor to the clipboard.
|
AlignmentEditorPasteHandlerE4 |
Handler that pastes the current contents of the clipboard into an active instance of
AlignmentEditorE4 . |
ChangePherogramQualityOutputTypeE4 |
Switches between the quality output types available for components displaying pherograms.
|
CreateConsensusSequenceHandlerE4 |
Handler that creates the consensus sequence from all single read sequences in the active instance
of
AlignmentEditorE4 . |
CutPherogramLeftHandlerE4 |
Handler that cuts the base call sequence of a pherogram attached to the current sequence on the left
of the current selection or cursor position.
|
CutPherogramRightHandlerE4 |
Handler that cuts the base call sequence of a pherogram attached to the current sequence on the right
of the current selection or cursor position.
|
EditSequenceHandlerE4 |
Opens the alignment editor from the CDM tree.
|
ExportSequenceToFileHandlerE4 |
Allows to export a single read alignment to various alignment formats using
JPhyloIO.
|
LoadPherogramHandlerE4 |
Handler that loads an additional read into the contig alignment displayed by an instance of
AlignmentEditorE4 . |
ReverseComplementHandlerE4 |
Reverse complements the single read sequence in an active
AlignmentEditorE4 , where the alignment cursor
is currently located. |
ShowPherogramHandlerE4 |
Displays an undistorted pherogram with
PherogramPartE4 . |
ToggleInsertOverwriteHandlerE4 |
Switches an
AlignmentEditorE4 between insertion and overwrite mode. |
ToggleLeftRightInsertionHandlerE4 |
Switches an
AlignmentEditorE4 between insertion in the base sequence to
the left or to the right. |
ToggleShowPherogramBaseCallLinesHandlerE4 | |
ToggleShowPherogramProbabilitiesHandlerE4 |
Toggles whether probability values (substitution, overcall and undercall) should be displayed
in pherogram areas of
AlignmentEditorE4 or PherogramPartE4 . |
UpdateConsensusSequenceHandlerE4 |
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