Package | Description |
---|---|
eu.etaxonomy.cdm.api.facade | |
eu.etaxonomy.cdm.api.service | |
eu.etaxonomy.cdm.api.service.dto | |
eu.etaxonomy.cdm.ext.bci | |
eu.etaxonomy.cdm.io.common.utils | |
eu.etaxonomy.cdm.io.jaxb | |
eu.etaxonomy.cdm.io.markup | |
eu.etaxonomy.cdm.io.specimen | |
eu.etaxonomy.cdm.io.specimen.excel.in | |
eu.etaxonomy.cdm.io.taxonx | |
eu.etaxonomy.cdm.model.molecular |
Provides classes for DNA samples and related sequences.
|
eu.etaxonomy.cdm.model.occurrence |
Provides classes for specimens, collections and field units.
|
eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence | |
eu.etaxonomy.cdm.persistence.dao.occurrence | |
eu.etaxonomy.cdm.strategy.cache.occurrence |
Modifier and Type | Method and Description |
---|---|
Collection |
DerivedUnitFacade.getCollection() |
Modifier and Type | Method and Description |
---|---|
DerivedUnit |
DerivedUnitFacade.addDuplicate(Collection collection,
java.lang.String catalogNumber,
java.lang.String accessionNumber,
TaxonName storedUnder,
PreservationMethod preservation)
Creates a duplicate specimen which derives from the same derivation event
as the facade specimen and adds collection data to it (all data available
in DerivedUnit and Specimen.
|
void |
DerivedUnitFacade.setCollection(Collection collection) |
Modifier and Type | Method and Description |
---|---|
Pager<Collection> |
ICollectionService.search(java.lang.Class<? extends Collection> clazz,
java.lang.String query,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a Paged List of Collection instances where the default field matches the String queryString (as interpreted by the Lucene QueryParser)
|
java.util.List<Collection> |
ICollectionService.searchByCode(java.lang.String code)
Return a list of collections matching the given code
|
java.util.List<Collection> |
CollectionServiceImpl.searchByCode(java.lang.String code) |
Modifier and Type | Method and Description |
---|---|
Pager<Collection> |
ICollectionService.search(java.lang.Class<? extends Collection> clazz,
java.lang.String query,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a Paged List of Collection instances where the default field matches the String queryString (as interpreted by the Lucene QueryParser)
|
UpdateResult |
CollectionServiceImpl.updateCaches(java.lang.Class<? extends Collection> clazz,
java.lang.Integer stepSize,
IIdentifiableEntityCacheStrategy<Collection> cacheStrategy,
IProgressMonitor monitor) |
UpdateResult |
CollectionServiceImpl.updateCaches(java.lang.Class<? extends Collection> clazz,
java.lang.Integer stepSize,
IIdentifiableEntityCacheStrategy<Collection> cacheStrategy,
IProgressMonitor monitor) |
Constructor and Description |
---|
CollectionDTO(Collection collection) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Collection> |
IBciServiceWrapper.getCollectionsByCode(java.lang.String code,
ICdmRepository appConfig)
Returns a list of collections collection code.
|
java.util.List<Collection> |
BciServiceWrapper.getCollectionsByCode(java.lang.String code,
ICdmRepository appConfig) |
Modifier and Type | Method and Description |
---|---|
Collection |
ImportDeduplicationHelper.getExistingCollection(STATE state,
Collection collection) |
Modifier and Type | Method and Description |
---|---|
Collection |
ImportDeduplicationHelper.getExistingCollection(STATE state,
Collection collection) |
Modifier and Type | Field and Description |
---|---|
protected java.util.List<Collection> |
DataSet.collections |
Modifier and Type | Method and Description |
---|---|
java.util.List<Collection> |
DataSet.getCollections() |
Modifier and Type | Method and Description |
---|---|
void |
DataSet.setCollections(java.util.List<Collection> value) |
Modifier and Type | Method and Description |
---|---|
Collection |
MarkupImportState.getCollectionByCode(java.lang.String code) |
Modifier and Type | Method and Description |
---|---|
void |
MarkupImportState.putCollectionByCode(java.lang.String code,
Collection collection) |
Modifier and Type | Field and Description |
---|---|
protected java.util.HashMap<java.lang.String,Collection> |
SpecimenImportStateBase.collections |
Modifier and Type | Method and Description |
---|---|
protected Collection |
SpecimenImportBase.getCollection(Institution institution,
java.lang.String collectionCode,
STATE state)
Look if the Collection does already exist
|
Modifier and Type | Method and Description |
---|---|
Collection |
SpecimenCdmExcelImportState.getCollection(java.lang.String key) |
Collection |
SpecimenCdmExcelImportState.putCollection(java.lang.String key,
Collection value) |
Modifier and Type | Method and Description |
---|---|
Collection |
SpecimenCdmExcelImportState.putCollection(java.lang.String key,
Collection value) |
Modifier and Type | Method and Description |
---|---|
Collection |
SimpleSpecimen.getCollection() |
Modifier and Type | Method and Description |
---|---|
void |
SimpleSpecimen.setCollection(Collection collection) |
Modifier and Type | Method and Description |
---|---|
Collection |
DnaSample.getStoredAt() |
Modifier and Type | Method and Description |
---|---|
void |
DnaSample.setStoredAt(Collection storedAt) |
Modifier and Type | Method and Description |
---|---|
Collection |
Collection.clone()
Clones this collection.
|
Collection |
DerivedUnit.getCollection() |
Collection |
Collection.getSuperCollection()
The collection
this collection is part of. |
static Collection |
Collection.NewInstance()
Factory method
|
Modifier and Type | Method and Description |
---|---|
void |
DerivedUnit.setCollection(Collection collection) |
void |
Collection.setSuperCollection(Collection superCollection) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Collection> |
CollectionDaoHibernateImpl.getCollectionByCode(java.lang.String code) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Collection> |
ICollectionDao.getCollectionByCode(java.lang.String code)
Returns a list of Collection instances matching the code supplied
|
Modifier and Type | Method and Description |
---|---|
java.lang.String |
CollectionDefaultCacheStrategy.getTitleCache(Collection collection) |
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